Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 113.11128 * 2 1 4 4 C 1.52369 * 114.10274 * 132.43566 * 2 1 3 5 5 N 1.45716 * 87.96171 * 113.99645 * 4 2 1 6 6 C 1.37096 * 133.17341 * 180.26553 * 5 4 2 7 7 H 1.08000 * 119.99947 * 331.65500 * 6 5 4 8 8 C 1.38949 * 120.00003 * 151.66727 * 6 5 4 9 9 N 1.31418 * 120.00013 * 163.67330 * 8 6 5 10 10 Si 1.86797 * 120.00078 * 343.67147 * 8 6 5 11 11 H 1.48500 * 109.47039 * 95.55303 * 10 8 6 12 12 H 1.48505 * 109.47281 * 215.55429 * 10 8 6 13 13 H 1.48501 * 109.46941 * 335.55160 * 10 8 6 14 14 C 1.33833 * 93.65082 * 359.97438 * 5 4 2 15 15 O 1.21293 * 133.24453 * 179.97438 * 14 5 4 16 16 H 1.08997 * 109.46832 * 172.79298 * 1 2 3 17 17 H 1.08999 * 109.46891 * 292.79492 * 1 2 3 18 18 H 1.08998 * 109.46863 * 52.79381 * 1 2 3 19 19 H 0.96699 * 113.99708 * 307.20875 * 3 2 1 20 20 H 1.09004 * 113.46915 * 359.22050 * 4 2 1 21 21 H 1.08996 * 113.47065 * 228.77070 * 4 2 1 22 22 H 0.97001 * 119.99937 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0909 1.3143 0.0000 4 6 2.1523 -0.9385 1.0265 5 7 2.6717 -1.7252 -0.0846 6 6 3.4234 -2.8697 -0.1530 7 1 4.1118 -3.1119 0.6431 8 6 3.2999 -3.7178 -1.2467 9 7 4.2205 -4.6256 -1.4815 10 14 1.8250 -3.5675 -2.3832 11 1 2.1815 -2.7165 -3.5468 12 1 1.4278 -4.9167 -2.8598 13 1 0.6933 -2.9498 -1.6464 14 6 2.1388 -0.9228 -1.0137 15 8 2.1464 -0.9361 -2.2265 16 1 -0.3633 -1.0195 -0.1289 17 1 -0.3633 0.3982 0.9474 18 1 -0.3633 0.6214 -0.8185 19 1 1.7540 1.8857 -0.7036 20 1 1.4169 -1.4713 1.6295 21 1 2.9310 -0.4694 1.6277 22 1 4.1345 -5.2174 -2.2453 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259732472.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = -72.886392 kcal Electronic energy + Delta-G solvation = -10229.283320 eV Core-core repulsion = 8170.870904 eV Total energy + Delta-G solvation = -2058.412416 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.28664 -37.74003 -36.93428 -34.83989 -31.87029 -28.80294 -25.80450 -24.09227 -20.93801 -19.32913 -18.26959 -17.73839 -16.97800 -16.15086 -15.89884 -15.17849 -14.81456 -14.29217 -13.82467 -13.36004 -13.27843 -13.05287 -12.60571 -12.47090 -11.97053 -11.80444 -11.30234 -10.18710 -9.94181 -8.69649 -6.32714 1.11984 1.27384 1.35719 1.70330 2.22906 2.55649 2.85243 2.88147 3.32561 3.77851 3.94468 4.54588 4.72006 4.79568 4.85523 5.13698 5.22138 5.58258 6.15433 6.59122 6.66970 6.91076 7.75066 8.42019 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.065542 B = 0.020954 C = 0.018533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.102628 B = 1335.919399 C = 1510.472768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.097 3.903 3 O -0.537 6.537 4 C 0.100 3.900 5 N -0.474 5.474 6 C -0.332 4.332 7 H 0.096 0.904 8 C 0.025 3.975 9 N -0.894 5.894 10 Si 0.970 3.030 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.276 1.276 14 C 0.395 3.605 15 O -0.592 6.592 16 H 0.059 0.941 17 H 0.112 0.888 18 H 0.081 0.919 19 H 0.400 0.600 20 H 0.120 0.880 21 H 0.100 0.900 22 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 8.656 5.203 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 O -0.345 6.345 4 C -0.022 4.022 5 N -0.195 5.195 6 C -0.459 4.459 7 H 0.114 0.886 8 C -0.180 4.180 9 N -0.531 5.531 10 Si 0.802 3.198 11 H -0.217 1.217 12 H -0.222 1.222 13 H -0.202 1.202 14 C 0.184 3.816 15 O -0.479 6.479 16 H 0.078 0.922 17 H 0.130 0.870 18 H 0.100 0.900 19 H 0.251 0.749 20 H 0.137 0.863 21 H 0.119 0.881 22 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.426 8.083 5.072 12.730 hybrid contribution -0.329 -0.232 -1.253 1.316 sum -8.755 7.851 3.819 12.364 Atomic orbital electron populations 1.22073 0.89470 1.03519 1.05639 1.22571 0.95883 0.83791 0.92588 1.86462 1.69498 1.21415 1.57098 1.22926 0.98745 0.89230 0.91252 1.45829 1.44151 1.21491 1.08077 1.19064 1.19211 0.98514 1.09074 0.88618 1.25846 0.99239 0.94602 0.98308 1.69751 1.32996 1.20908 1.29437 0.85184 0.80199 0.74308 0.80127 1.21723 1.22215 1.20222 1.23308 0.84640 0.85426 0.88244 1.90440 1.67145 1.75986 1.14359 0.92179 0.86973 0.90029 0.74875 0.86254 0.88150 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.41 71.98 0.68 -3.07 14 2 C 0.10 3.29 2.00 -11.96 -0.02 3.27 14 3 O -0.54 -16.16 13.48 -148.98 -2.01 -18.17 14 4 C 0.10 3.52 8.39 82.98 0.70 4.22 14 5 N -0.47 -23.53 3.01 -687.66 -2.07 -25.61 14 6 C -0.33 -19.13 10.98 84.04 0.92 -18.21 14 7 H 0.10 5.63 8.06 -2.91 -0.02 5.61 14 8 C 0.03 1.51 5.49 84.93 0.47 1.97 14 9 N -0.89 -54.80 13.96 21.66 0.30 -54.49 14 10 Si 0.97 52.79 24.39 68.60 1.67 54.46 14 11 H -0.29 -17.15 6.47 99.48 0.64 -16.51 14 12 H -0.29 -14.94 7.11 99.48 0.71 -14.23 14 13 H -0.28 -14.41 6.68 99.48 0.66 -13.75 14 14 C 0.39 19.32 6.64 84.24 0.56 19.88 14 15 O -0.59 -33.59 13.60 -3.07 -0.04 -33.63 14 16 H 0.06 1.69 8.10 -2.39 -0.02 1.67 14 17 H 0.11 1.96 8.14 -2.39 -0.02 1.94 14 18 H 0.08 1.82 8.14 -2.39 -0.02 1.80 14 19 H 0.40 8.70 9.08 -74.06 -0.67 8.03 14 20 H 0.12 3.39 8.00 -2.39 -0.02 3.37 14 21 H 0.10 3.24 8.14 -2.39 -0.02 3.22 14 22 H 0.28 16.18 8.31 -92.71 -0.77 15.41 14 Total: -1.00 -74.42 197.58 1.60 -72.81 By element: Atomic # 1 Polarization: -3.89 SS G_CDS: 0.45 Total: -3.44 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 3.30 Total: 8.06 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.77 Total: -80.10 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -2.05 Total: -51.80 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 1.67 Total: 54.46 kcal Total: -74.42 1.60 -72.81 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732472.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.075 kcal (2) G-P(sol) polarization free energy of solvation -74.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds