Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48498 * 109.46889 * 270.00480 * 3 2 1 5 5 H 1.48508 * 109.46901 * 29.99902 * 3 2 1 6 6 H 1.48496 * 109.47402 * 150.00161 * 3 2 1 7 7 C 1.37878 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00278 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.05520 * 301.42459 * 9 7 2 11 11 C 1.54268 * 110.02899 * 62.83483 * 9 7 2 12 12 C 1.54895 * 104.19476 * 142.89394 * 11 9 7 13 13 C 1.54961 * 102.77671 * 322.08719 * 12 11 9 14 14 C 1.53869 * 110.03390 * 180.02562 * 9 7 2 15 15 H 1.09002 * 110.03268 * 0.02562 * 14 9 7 16 16 N 1.46896 * 110.03145 * 121.38632 * 14 9 7 17 17 H 0.97002 * 119.99875 * 359.97438 * 1 2 3 18 18 H 0.96703 * 114.00162 * 58.58197 * 10 9 7 19 19 H 1.08997 * 110.48788 * 261.57302 * 11 9 7 20 20 H 1.09000 * 110.48806 * 24.08602 * 11 9 7 21 21 H 1.09001 * 110.75082 * 80.37254 * 12 11 9 22 22 H 1.08991 * 110.75596 * 203.55944 * 12 11 9 23 23 H 1.08997 * 110.47708 * 279.23123 * 13 12 11 24 24 H 1.09002 * 110.53308 * 156.56515 * 13 12 11 25 25 H 1.00900 * 110.99936 * 179.31283 * 16 14 9 26 26 H 1.00903 * 111.00142 * 303.26157 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4004 -2.5739 1.1452 11 6 0.4133 -2.6256 -1.2897 12 6 0.5046 -4.1278 -1.6563 13 6 1.9682 -4.4815 -1.2901 14 6 2.2394 -3.6784 -0.0005 15 1 3.2641 -3.3068 -0.0001 16 7 2.0117 -4.5258 1.1776 17 1 -0.4850 0.8401 0.0004 18 1 -0.2461 -1.8570 1.2027 19 1 -0.6219 -2.3411 -1.1015 20 1 0.8386 -2.0108 -2.0830 21 1 -0.1946 -4.7140 -1.0600 22 1 0.3226 -4.2775 -2.7204 23 1 2.6462 -4.1688 -2.0841 24 1 2.0675 -5.5505 -1.1015 25 1 2.6455 -5.3108 1.1863 26 1 2.0886 -3.9896 2.0290 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259740957.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = -61.137466 kcal Electronic energy + Delta-G solvation = -10578.277232 eV Core-core repulsion = 8656.207382 eV Total energy + Delta-G solvation = -1922.069850 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.85112 -33.65762 -32.00964 -31.37773 -27.33440 -25.80071 -23.54373 -19.76827 -18.42127 -17.02479 -15.16339 -14.64876 -14.42610 -13.94424 -13.50206 -12.86560 -12.05830 -11.67034 -11.18185 -10.83648 -10.76798 -10.54256 -10.42779 -10.08671 -9.90345 -9.67036 -9.01029 -8.51139 -7.89559 -7.63188 -6.14201 -4.22442 3.23898 3.31167 3.34529 4.34014 5.09897 5.46094 5.72668 5.75814 5.98695 6.30408 6.54309 6.56623 6.69796 6.76784 6.90170 7.13729 7.33681 7.62192 7.68147 7.90807 8.04602 8.24194 8.44142 8.80533 9.46379 9.74647 10.91856 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.061939 B = 0.017424 C = 0.016784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.947033 B = 1606.563293 C = 1667.830030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.256 3.744 10 O -0.576 6.576 11 C -0.118 4.118 12 C -0.122 4.122 13 C -0.115 4.115 14 C 0.100 3.900 15 H 0.029 0.971 16 N -0.827 5.827 17 H 0.266 0.734 18 H 0.375 0.625 19 H 0.060 0.940 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.314 0.686 26 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -4.053 -1.293 4.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.074 0.926 9 C 0.216 3.784 10 O -0.384 6.384 11 C -0.156 4.156 12 C -0.159 4.159 13 C -0.153 4.153 14 C -0.011 4.011 15 H 0.046 0.954 16 N -0.357 5.357 17 H 0.076 0.924 18 H 0.224 0.776 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.124 0.876 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.895 -4.560 -1.476 5.154 hybrid contribution 1.163 1.795 0.010 2.139 sum 3.058 -2.764 -1.465 4.375 Atomic orbital electron populations 1.69667 1.05863 1.27239 1.50746 1.25000 0.94964 0.99274 0.93966 0.86523 0.79859 0.83039 0.78113 1.20606 1.21068 1.19957 1.21877 0.93349 0.91397 1.51246 0.92578 1.19173 0.86256 0.89950 0.83025 1.86138 1.51751 1.53489 1.47034 1.22828 1.00964 0.92137 0.99692 1.22483 0.95942 0.99125 0.98364 1.22376 0.97485 0.98529 0.96888 1.22120 0.96869 0.92598 0.89530 0.95352 1.58584 1.59148 1.12423 1.05516 0.92414 0.77567 0.92140 0.92731 0.92198 0.93836 0.92572 0.92757 0.87571 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 10.72 55.43 0.59 -23.93 15 2 C 0.07 1.89 5.25 -17.82 -0.09 1.80 15 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.54 -14.84 8.07 -34.44 -0.28 -15.12 15 8 H 0.06 1.54 7.33 -52.48 -0.38 1.16 15 9 C 0.26 6.54 0.97 -90.66 -0.09 6.45 15 10 O -0.58 -15.39 11.52 -35.23 -0.41 -15.79 15 11 C -0.12 -2.86 5.17 -25.07 -0.13 -2.99 15 12 C -0.12 -2.51 6.91 -24.70 -0.17 -2.68 15 13 C -0.11 -2.25 6.54 -25.01 -0.16 -2.41 15 14 C 0.10 2.22 3.68 -66.57 -0.24 1.98 15 15 H 0.03 0.65 7.37 -51.93 -0.38 0.26 15 16 N -0.83 -16.67 8.55 -3.70 -0.03 -16.70 15 17 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 18 H 0.37 10.31 7.08 45.56 0.32 10.63 15 19 H 0.06 1.55 7.89 -51.93 -0.41 1.14 15 20 H 0.05 1.37 7.85 -51.93 -0.41 0.97 15 21 H 0.06 1.26 8.14 -51.93 -0.42 0.83 15 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.05 0.96 8.02 -51.93 -0.42 0.54 15 25 H 0.31 5.28 9.04 -39.29 -0.36 4.92 15 26 H 0.35 7.16 8.39 -39.29 -0.33 6.83 15 LS Contribution 213.93 15.07 3.22 3.22 Total: -1.00 -28.07 213.93 -5.57 -33.64 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -2.77 Total: 16.52 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.17 Total: -12.98 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.56 Total: -40.63 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.41 Total: -15.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -28.07 -5.57 -33.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740957.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.495 kcal (2) G-P(sol) polarization free energy of solvation -28.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds