Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00174 * 2 1 4 4 H 1.48498 * 109.46889 * 270.00480 * 3 2 1 5 5 H 1.48508 * 109.46901 * 29.99902 * 3 2 1 6 6 H 1.48496 * 109.47402 * 150.00161 * 3 2 1 7 7 C 1.37878 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99856 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00278 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.05520 * 301.42459 * 9 7 2 11 11 C 1.54268 * 110.02899 * 62.83483 * 9 7 2 12 12 C 1.54895 * 104.19476 * 142.89394 * 11 9 7 13 13 C 1.54961 * 102.77671 * 322.08719 * 12 11 9 14 14 C 1.53869 * 110.03390 * 180.02562 * 9 7 2 15 15 H 1.09002 * 110.03268 * 0.02562 * 14 9 7 16 16 N 1.46896 * 110.03145 * 121.38632 * 14 9 7 17 17 H 0.97002 * 119.99875 * 359.97438 * 1 2 3 18 18 H 0.96703 * 114.00162 * 58.58197 * 10 9 7 19 19 H 1.08997 * 110.48788 * 261.57302 * 11 9 7 20 20 H 1.09000 * 110.48806 * 24.08602 * 11 9 7 21 21 H 1.09001 * 110.75082 * 80.37254 * 12 11 9 22 22 H 1.08991 * 110.75596 * 203.55944 * 12 11 9 23 23 H 1.08997 * 110.47708 * 279.23123 * 13 12 11 24 24 H 1.09002 * 110.53308 * 156.56515 * 13 12 11 25 25 H 1.00900 * 110.99936 * 179.31283 * 16 14 9 26 26 H 1.00903 * 111.00142 * 303.26157 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4004 -2.5739 1.1452 11 6 0.4133 -2.6256 -1.2897 12 6 0.5046 -4.1278 -1.6563 13 6 1.9682 -4.4815 -1.2901 14 6 2.2394 -3.6784 -0.0005 15 1 3.2641 -3.3068 -0.0001 16 7 2.0117 -4.5258 1.1776 17 1 -0.4850 0.8401 0.0004 18 1 -0.2461 -1.8570 1.2027 19 1 -0.6219 -2.3411 -1.1015 20 1 0.8386 -2.0108 -2.0830 21 1 -0.1946 -4.7140 -1.0600 22 1 0.3226 -4.2775 -2.7204 23 1 2.6462 -4.1688 -2.0841 24 1 2.0675 -5.5505 -1.1015 25 1 2.6455 -5.3108 1.1863 26 1 2.0886 -3.9896 2.0290 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259740957.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = -82.673110 kcal Electronic energy + Delta-G solvation = -10579.211088 eV Core-core repulsion = 8656.207382 eV Total energy + Delta-G solvation = -1923.003706 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.69124 -35.57813 -34.07932 -33.08997 -29.29736 -27.54347 -25.48320 -21.54440 -20.24482 -19.06523 -16.99229 -16.56713 -16.29572 -15.70858 -15.30379 -14.63293 -13.93956 -13.55961 -13.11775 -12.75909 -12.62935 -12.30631 -12.26807 -11.85297 -11.64239 -11.53288 -10.94758 -10.55039 -9.92923 -9.28216 -8.19396 -6.35591 1.37953 1.39875 1.49295 2.37732 3.03727 3.80320 4.00310 4.07729 4.31835 4.49958 4.77417 4.97300 4.99111 5.08761 5.21848 5.31463 5.53727 5.57609 5.72245 5.90041 6.16491 6.42919 6.74178 6.90064 7.36589 7.61818 8.84845 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.061939 B = 0.017424 C = 0.016784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.947033 B = 1606.563293 C = 1667.830030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.565 4.565 8 H 0.048 0.952 9 C 0.239 3.761 10 O -0.581 6.581 11 C -0.114 4.114 12 C -0.113 4.113 13 C -0.107 4.107 14 C 0.098 3.902 15 H 0.020 0.980 16 N -0.827 5.827 17 H 0.268 0.732 18 H 0.366 0.634 19 H 0.036 0.964 20 H 0.038 0.962 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.336 0.664 26 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -4.624 -1.768 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.604 4.604 8 H 0.066 0.934 9 C 0.199 3.801 10 O -0.388 6.388 11 C -0.153 4.153 12 C -0.151 4.151 13 C -0.145 4.145 14 C -0.013 4.013 15 H 0.038 0.962 16 N -0.358 5.358 17 H 0.077 0.923 18 H 0.214 0.786 19 H 0.055 0.945 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.599 -5.158 -1.955 6.098 hybrid contribution 0.933 1.968 0.179 2.186 sum 3.532 -3.189 -1.776 5.080 Atomic orbital electron populations 1.69759 1.06830 1.27987 1.50688 1.25705 0.95807 1.02239 0.93540 0.85573 0.78593 0.79277 0.78224 1.20022 1.20553 1.19873 1.22156 0.93219 0.92946 1.52032 0.93366 1.19470 0.86773 0.90893 0.82962 1.86135 1.51722 1.52990 1.47947 1.22676 0.99041 0.94787 0.98796 1.22420 0.96748 0.95878 1.00030 1.22364 0.96755 0.99698 0.95696 1.22052 0.95329 0.92328 0.91634 0.96190 1.58526 1.59980 1.12656 1.04620 0.92262 0.78557 0.94491 0.94359 0.92550 0.91111 0.91253 0.90093 0.85139 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 10.72 21.45 0.23 -50.14 15 2 C 0.03 1.47 5.25 84.65 0.44 1.92 15 3 Si 0.96 43.04 29.54 68.60 2.03 45.07 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.57 -31.18 8.07 25.60 0.21 -30.97 15 8 H 0.05 2.66 7.33 -2.91 -0.02 2.64 15 9 C 0.24 12.16 0.97 -10.82 -0.01 12.15 15 10 O -0.58 -31.24 11.52 -148.98 -1.72 -32.96 15 11 C -0.11 -5.54 5.17 31.67 0.16 -5.38 15 12 C -0.11 -4.42 6.91 31.91 0.22 -4.20 15 13 C -0.11 -3.89 6.54 31.71 0.21 -3.68 15 14 C 0.10 4.22 3.68 45.66 0.17 4.39 15 15 H 0.02 0.89 7.37 -2.39 -0.02 0.87 15 16 N -0.83 -31.86 8.55 -165.62 -1.42 -33.27 15 17 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 18 H 0.37 20.58 7.08 -74.06 -0.52 20.05 15 19 H 0.04 1.91 7.89 -2.39 -0.02 1.89 15 20 H 0.04 1.92 7.85 -2.39 -0.02 1.91 15 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.08 2.52 8.02 -2.39 -0.02 2.50 15 25 H 0.34 10.40 9.04 -89.69 -0.81 9.59 15 26 H 0.34 13.76 8.39 -89.69 -0.75 13.01 15 Total: -1.00 -58.46 213.93 -0.37 -58.83 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.89 Total: 38.25 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 1.40 Total: -25.78 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.19 Total: -83.41 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.72 Total: -32.96 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -58.46 -0.37 -58.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740957.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.846 kcal (2) G-P(sol) polarization free energy of solvation -58.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds