Wall clock time and date at job start Mon Mar 30 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99819 * 2 1 4 4 H 1.48502 * 109.47261 * 90.00337 * 3 2 1 5 5 H 1.48504 * 109.46816 * 210.00156 * 3 2 1 6 6 H 1.48500 * 109.47266 * 330.00185 * 3 2 1 7 7 C 1.37875 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00550 * 190.06994 * 7 2 1 9 9 C 1.50700 * 119.99490 * 10.06804 * 7 2 1 10 10 O 1.42901 * 110.01569 * 53.11229 * 9 7 2 11 11 C 1.54259 * 110.03798 * 291.66866 * 9 7 2 12 12 C 1.54884 * 104.19928 * 217.10829 * 11 9 7 13 13 C 1.54885 * 102.75199 * 37.93917 * 12 11 9 14 14 C 1.53872 * 110.03418 * 174.49869 * 9 7 2 15 15 H 1.08996 * 110.03933 * 238.57288 * 14 9 7 16 16 N 1.46907 * 110.02694 * 0.02562 * 14 9 7 17 17 H 0.97000 * 119.99881 * 182.17176 * 1 2 3 18 18 H 0.96699 * 113.99749 * 294.51831 * 10 9 7 19 19 H 1.09002 * 110.48350 * 335.78663 * 11 9 7 20 20 H 1.09002 * 110.49062 * 98.42412 * 11 9 7 21 21 H 1.09004 * 110.75683 * 279.62201 * 12 11 9 22 22 H 1.09003 * 110.91580 * 156.33108 * 12 11 9 23 23 H 1.09000 * 110.48932 * 203.38264 * 13 12 11 24 24 H 1.08995 * 110.59936 * 80.78855 * 13 12 11 25 25 H 1.00910 * 110.99488 * 179.97438 * 16 14 9 26 26 H 1.00894 * 110.99592 * 303.94690 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6528 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0721 -1.2013 0.1630 9 6 1.2685 -2.4889 -0.2293 10 8 0.4996 -2.4087 -1.4311 11 6 0.3466 -2.7918 0.9699 12 6 0.4308 -4.3295 1.1349 13 6 1.9196 -4.6254 0.8269 14 6 2.2686 -3.6548 -0.3203 15 1 2.1669 -4.1600 -1.2808 16 7 3.6403 -3.1550 -0.1562 17 1 -0.4850 -0.8395 0.0318 18 1 -0.2188 -1.7624 -1.3960 19 1 0.7109 -2.2913 1.8670 20 1 -0.6768 -2.4871 0.7509 21 1 -0.2191 -4.8312 0.4180 22 1 0.1808 -4.6258 2.1537 23 1 2.0442 -5.6588 0.5034 24 1 2.5396 -4.4225 1.7001 25 1 4.3089 -3.9086 -0.2131 26 1 3.8466 -2.4363 -0.8336 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259740960.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:14 Heat of formation + Delta-G solvation = -52.771212 kcal Electronic energy + Delta-G solvation = -10647.236184 eV Core-core repulsion = 8725.529122 eV Total energy + Delta-G solvation = -1921.707062 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.27393 -34.18331 -31.97445 -31.78137 -27.08222 -25.60053 -23.62800 -20.08234 -18.83767 -17.34048 -15.51953 -14.77585 -14.59629 -13.74936 -13.63210 -13.03627 -12.43722 -11.50997 -11.39133 -10.73819 -10.67179 -10.52670 -10.35998 -10.22260 -10.00480 -9.90871 -9.13643 -8.46118 -7.99137 -7.56446 -6.30300 -4.06243 3.45570 3.48880 3.65005 4.54208 5.11859 5.32987 5.50518 5.61178 5.83075 6.15476 6.25472 6.34581 6.42173 6.59327 6.67210 6.75518 7.07186 7.19826 7.32139 7.95487 8.23363 8.29823 8.59522 8.90590 9.17829 9.64804 10.99074 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.057529 B = 0.019500 C = 0.016998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.592979 B = 1435.548845 C = 1646.886845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.022 3.978 3 Si 1.072 2.928 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.602 4.602 8 H 0.082 0.918 9 C 0.231 3.769 10 O -0.595 6.595 11 C -0.135 4.135 12 C -0.125 4.125 13 C -0.113 4.113 14 C 0.108 3.892 15 H 0.024 0.976 16 N -0.825 5.825 17 H 0.267 0.733 18 H 0.369 0.631 19 H 0.067 0.933 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.312 0.688 26 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -5.158 0.611 5.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.181 4.181 3 Si 0.900 3.100 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.640 4.640 8 H 0.100 0.900 9 C 0.192 3.808 10 O -0.404 6.404 11 C -0.174 4.174 12 C -0.163 4.163 13 C -0.152 4.152 14 C -0.003 4.003 15 H 0.042 0.958 16 N -0.356 5.356 17 H 0.080 0.920 18 H 0.218 0.782 19 H 0.086 0.914 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.858 -3.749 1.092 4.839 hybrid contribution -0.112 -1.607 -0.665 1.743 sum 2.745 -5.357 0.428 6.034 Atomic orbital electron populations 1.70918 1.07074 1.30410 1.47817 1.25873 0.96439 1.02854 0.92884 0.83520 0.74782 0.75096 0.76570 1.21679 1.21480 1.21213 1.22687 0.97805 0.91382 1.52134 0.89999 1.19461 0.87111 0.93581 0.80688 1.86242 1.49262 1.64243 1.40619 1.23172 0.99538 0.93053 1.01607 1.22468 0.95899 0.98368 0.99568 1.22362 0.96824 0.96919 0.99050 1.21636 0.89495 0.94250 0.94935 0.95761 1.59065 1.02284 1.14677 1.59594 0.91964 0.78178 0.91440 0.93078 0.92610 0.92905 0.93403 0.91000 0.87679 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 12.85 55.43 0.71 -26.02 15 2 C 0.02 0.62 5.25 -17.82 -0.09 0.53 15 3 Si 1.07 25.16 29.92 -169.99 -5.09 20.08 15 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.49 7.11 56.52 0.40 -6.08 15 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.60 -16.56 7.36 -34.44 -0.25 -16.82 15 8 H 0.08 2.24 5.51 -52.49 -0.29 1.95 15 9 C 0.23 5.87 0.96 -90.66 -0.09 5.78 15 10 O -0.60 -15.85 12.84 -35.23 -0.45 -16.30 15 11 C -0.13 -3.20 5.05 -25.08 -0.13 -3.33 15 12 C -0.13 -2.46 6.91 -24.74 -0.17 -2.63 15 13 C -0.11 -2.18 6.53 -25.07 -0.16 -2.34 15 14 C 0.11 2.40 3.83 -66.59 -0.26 2.14 15 15 H 0.02 0.55 7.95 -51.93 -0.41 0.14 15 16 N -0.82 -16.78 7.74 -3.71 -0.03 -16.81 15 17 H 0.27 7.54 3.89 -40.82 -0.16 7.38 15 18 H 0.37 9.80 6.37 45.56 0.29 10.10 15 19 H 0.07 1.71 7.85 -51.93 -0.41 1.30 15 20 H 0.05 1.23 6.65 -51.93 -0.35 0.88 15 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.07 1.38 8.05 -51.93 -0.42 0.96 15 25 H 0.31 5.25 9.07 -39.29 -0.36 4.89 15 26 H 0.35 7.39 7.41 -39.29 -0.29 7.10 15 LS Contribution 207.73 15.07 3.13 3.13 Total: -1.00 -29.72 207.73 -5.33 -35.05 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -2.45 Total: 17.53 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.15 Total: -16.66 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.68 Total: -42.83 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.45 Total: -16.30 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.09 Total: 20.08 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -29.72 -5.33 -35.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740960.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.719 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds