Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00070 * 2 1 4 4 H 1.48502 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46868 * 299.99813 * 3 2 1 6 6 H 1.48499 * 109.46781 * 59.99936 * 3 2 1 7 7 C 1.37881 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99943 * 174.83536 * 7 2 1 9 9 C 1.50696 * 119.99851 * 354.84493 * 7 2 1 10 10 O 1.42908 * 110.43542 * 57.22039 * 9 7 2 11 11 C 1.54891 * 110.48771 * 179.90610 * 9 7 2 12 12 C 1.54884 * 102.74879 * 156.62263 * 11 9 7 13 13 C 1.54271 * 104.19709 * 322.05520 * 12 11 9 14 14 C 1.53882 * 106.59508 * 23.61397 * 13 12 11 15 15 H 1.08996 * 110.03052 * 119.28243 * 14 13 12 16 16 N 1.46901 * 110.06963 * 240.69381 * 14 13 12 17 17 H 0.97003 * 119.99860 * 184.69353 * 1 2 3 18 18 H 0.96703 * 113.99442 * 55.43546 * 10 9 7 19 19 H 1.09000 * 110.75065 * 274.93662 * 11 9 7 20 20 H 1.09001 * 110.75506 * 38.30117 * 11 9 7 21 21 H 1.08997 * 110.48437 * 203.38236 * 12 11 9 22 22 H 1.08993 * 110.60416 * 80.79264 * 12 11 9 23 23 H 1.08997 * 110.03359 * 264.33206 * 13 12 11 24 24 H 1.08998 * 110.07464 * 142.91736 * 13 12 11 25 25 H 1.00905 * 110.99908 * 297.18776 * 16 14 13 26 26 H 1.00893 * 111.00124 * 61.14431 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1959 -0.0837 9 6 1.2557 -2.4964 0.1184 10 8 0.2935 -2.6155 -0.9315 11 6 2.2401 -3.6920 0.0936 12 6 1.4399 -4.8086 0.8091 13 6 0.6852 -4.0712 1.9345 14 6 0.5680 -2.6011 1.4953 15 1 -0.4815 -2.3192 1.4109 16 7 1.2465 -1.7299 2.4641 17 1 -0.4850 -0.8373 0.0687 18 1 0.6668 -2.5259 -1.8191 19 1 2.4725 -3.9797 -0.9318 20 1 3.1500 -3.4548 0.6449 21 1 2.1161 -5.5538 1.2279 22 1 0.7362 -5.2771 0.1212 23 1 1.2460 -4.1388 2.8667 24 1 -0.3075 -4.5024 2.0641 25 1 0.8079 -1.7872 3.3711 26 1 2.2291 -1.9510 2.5231 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259740964.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -60.317393 kcal Electronic energy + Delta-G solvation = -10708.267654 eV Core-core repulsion = 8786.233365 eV Total energy + Delta-G solvation = -1922.034289 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.22067 -33.94874 -32.17423 -30.92397 -27.45149 -25.39524 -23.43375 -19.97269 -18.74203 -17.10083 -15.81065 -14.66958 -14.14518 -13.59956 -13.51521 -12.82657 -12.23879 -11.90884 -11.35374 -11.12692 -10.58709 -10.48056 -10.40328 -10.04725 -9.97993 -9.78964 -8.92637 -8.21276 -7.80156 -7.37257 -6.02660 -3.84948 3.55610 3.61788 3.72367 4.72063 5.30858 5.42856 5.48405 5.68328 5.80570 6.06261 6.24785 6.38868 6.41515 6.51740 6.60888 6.70018 6.92011 7.15245 7.39873 8.09904 8.41448 8.56133 8.65448 9.15431 9.27292 9.99841 11.36307 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.063991 B = 0.019064 C = 0.018076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.458594 B = 1468.392376 C = 1548.651940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 1.068 2.932 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.620 4.620 8 H 0.042 0.958 9 C 0.238 3.762 10 O -0.579 6.579 11 C -0.141 4.141 12 C -0.119 4.119 13 C -0.159 4.159 14 C 0.111 3.889 15 H 0.070 0.930 16 N -0.800 5.800 17 H 0.285 0.715 18 H 0.359 0.641 19 H 0.050 0.950 20 H 0.060 0.940 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.313 0.687 26 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -5.592 2.389 6.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.152 4.152 3 Si 0.899 3.101 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.657 4.657 8 H 0.061 0.939 9 C 0.199 3.801 10 O -0.383 6.383 11 C -0.179 4.179 12 C -0.157 4.157 13 C -0.199 4.199 14 C -0.002 4.002 15 H 0.088 0.912 16 N -0.328 5.328 17 H 0.099 0.901 18 H 0.205 0.795 19 H 0.069 0.931 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.124 0.876 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.166 -3.441 2.366 4.704 hybrid contribution 0.870 -2.574 0.271 2.731 sum 3.037 -6.014 2.637 7.235 Atomic orbital electron populations 1.70510 1.07022 1.32768 1.42714 1.25345 0.96356 1.01454 0.92014 0.83608 0.74387 0.75770 0.76385 1.22120 1.22140 1.21568 1.21964 0.93747 0.91614 1.58402 0.93943 1.19593 0.84443 0.92023 0.84043 1.86307 1.39726 1.95397 1.16883 1.23090 0.99056 0.96978 0.98813 1.22267 0.98420 0.97468 0.97533 1.23148 0.99201 0.99870 0.97727 1.21724 0.98355 0.86292 0.93793 0.91165 1.58586 1.05926 1.59026 1.09253 0.90135 0.79510 0.93086 0.92125 0.93594 0.92312 0.93202 0.93067 0.87618 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.35 55.43 0.74 -26.49 15 2 C 0.06 1.66 4.89 -17.82 -0.09 1.57 15 3 Si 1.07 25.99 29.91 -169.99 -5.08 20.90 15 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 7 C -0.62 -16.98 6.95 -34.44 -0.24 -17.22 15 8 H 0.04 1.18 7.77 -52.49 -0.41 0.78 15 9 C 0.24 5.86 0.62 -90.11 -0.06 5.80 15 10 O -0.58 -14.65 11.39 -35.23 -0.40 -15.05 15 11 C -0.14 -2.98 6.01 -24.74 -0.15 -3.12 15 12 C -0.12 -2.21 6.81 -25.07 -0.17 -2.38 15 13 C -0.16 -3.04 6.58 -25.61 -0.17 -3.21 15 14 C 0.11 2.56 2.89 -66.59 -0.19 2.36 15 15 H 0.07 1.82 7.09 -51.93 -0.37 1.45 15 16 N -0.80 -17.58 7.68 -3.72 -0.03 -17.61 15 17 H 0.29 8.80 4.93 -40.82 -0.20 8.60 15 18 H 0.36 8.29 9.05 45.56 0.41 8.71 15 19 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.06 1.27 8.05 -51.93 -0.42 0.85 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.05 0.86 7.92 -51.93 -0.41 0.45 15 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 25 H 0.31 5.95 9.07 -39.29 -0.36 5.60 15 26 H 0.33 6.99 8.69 -39.30 -0.34 6.65 15 LS Contribution 213.53 15.07 3.22 3.22 Total: -1.00 -30.62 213.53 -5.20 -35.82 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -2.58 Total: 15.40 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.06 Total: -16.20 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.71 Total: -44.10 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.40 Total: -15.05 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.90 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -30.62 -5.20 -35.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740964.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.499 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds