Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00070 * 2 1 4 4 H 1.48502 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46868 * 299.99813 * 3 2 1 6 6 H 1.48499 * 109.46781 * 59.99936 * 3 2 1 7 7 C 1.37881 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99943 * 174.83536 * 7 2 1 9 9 C 1.50696 * 119.99851 * 354.84493 * 7 2 1 10 10 O 1.42908 * 110.43542 * 57.22039 * 9 7 2 11 11 C 1.54891 * 110.48771 * 179.90610 * 9 7 2 12 12 C 1.54884 * 102.74879 * 156.62263 * 11 9 7 13 13 C 1.54271 * 104.19709 * 322.05520 * 12 11 9 14 14 C 1.53882 * 106.59508 * 23.61397 * 13 12 11 15 15 H 1.08996 * 110.03052 * 119.28243 * 14 13 12 16 16 N 1.46901 * 110.06963 * 240.69381 * 14 13 12 17 17 H 0.97003 * 119.99860 * 184.69353 * 1 2 3 18 18 H 0.96703 * 113.99442 * 55.43546 * 10 9 7 19 19 H 1.09000 * 110.75065 * 274.93662 * 11 9 7 20 20 H 1.09001 * 110.75506 * 38.30117 * 11 9 7 21 21 H 1.08997 * 110.48437 * 203.38236 * 12 11 9 22 22 H 1.08993 * 110.60416 * 80.79264 * 12 11 9 23 23 H 1.08997 * 110.03359 * 264.33206 * 13 12 11 24 24 H 1.08998 * 110.07464 * 142.91736 * 13 12 11 25 25 H 1.00905 * 110.99908 * 297.18776 * 16 14 13 26 26 H 1.00893 * 111.00124 * 61.14431 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1959 -0.0837 9 6 1.2557 -2.4964 0.1184 10 8 0.2935 -2.6155 -0.9315 11 6 2.2401 -3.6920 0.0936 12 6 1.4399 -4.8086 0.8091 13 6 0.6852 -4.0712 1.9345 14 6 0.5680 -2.6011 1.4953 15 1 -0.4815 -2.3192 1.4109 16 7 1.2465 -1.7299 2.4641 17 1 -0.4850 -0.8373 0.0687 18 1 0.6668 -2.5259 -1.8191 19 1 2.4725 -3.9797 -0.9318 20 1 3.1500 -3.4548 0.6449 21 1 2.1161 -5.5538 1.2279 22 1 0.7362 -5.2771 0.1212 23 1 1.2460 -4.1388 2.8667 24 1 -0.3075 -4.5024 2.0641 25 1 0.8079 -1.7872 3.3711 26 1 2.2291 -1.9510 2.5231 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259740964.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = -84.460624 kcal Electronic energy + Delta-G solvation = -10709.314583 eV Core-core repulsion = 8786.233365 eV Total energy + Delta-G solvation = -1923.081218 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.00716 -35.82556 -34.20137 -32.71642 -29.26664 -27.16407 -25.45765 -21.57529 -20.62799 -19.13160 -17.63095 -16.48307 -15.93089 -15.52427 -15.17769 -14.56910 -14.21874 -13.72472 -13.20055 -12.83361 -12.51120 -12.21742 -12.01060 -11.90820 -11.85998 -11.47245 -10.81340 -10.35891 -9.82542 -9.07890 -8.24373 -6.06881 1.59096 1.68894 1.81724 2.71609 3.45507 3.64794 3.87873 3.93049 4.16018 4.39765 4.65478 4.75526 4.83967 4.95704 5.00061 5.09981 5.30783 5.36581 5.61815 6.06709 6.39357 6.70724 6.90980 7.01501 7.33382 7.84921 9.12619 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.063991 B = 0.019064 C = 0.018076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.458594 B = 1468.392376 C = 1548.651940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 1.108 2.892 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.617 4.617 8 H 0.034 0.966 9 C 0.219 3.781 10 O -0.591 6.591 11 C -0.137 4.137 12 C -0.111 4.111 13 C -0.151 4.151 14 C 0.112 3.888 15 H 0.031 0.969 16 N -0.816 5.816 17 H 0.272 0.728 18 H 0.364 0.636 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.329 0.671 26 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -6.449 2.964 8.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.934 3.066 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.655 4.655 8 H 0.052 0.948 9 C 0.180 3.820 10 O -0.396 6.396 11 C -0.175 4.175 12 C -0.149 4.149 13 C -0.191 4.191 14 C 0.000 4.000 15 H 0.050 0.950 16 N -0.345 5.345 17 H 0.084 0.916 18 H 0.210 0.790 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.141 0.859 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.275 -4.316 2.942 6.165 hybrid contribution 0.546 -2.328 0.080 2.393 sum 3.821 -6.644 3.022 8.239 Atomic orbital electron populations 1.70628 1.08023 1.32010 1.45667 1.26469 0.96323 1.04703 0.91506 0.83060 0.74308 0.72859 0.76335 1.20344 1.21775 1.21593 1.22230 0.93402 0.93050 1.56817 0.94789 1.19861 0.85237 0.92445 0.84493 1.86297 1.40419 1.95430 1.17474 1.22978 0.98421 0.96365 0.99691 1.22230 0.98490 0.97121 0.97033 1.23029 1.00371 0.96805 0.98891 1.21593 0.95930 0.89067 0.93438 0.95029 1.58427 1.06395 1.59598 1.10123 0.91558 0.78981 0.92579 0.91962 0.90343 0.92328 0.90882 0.92184 0.85861 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.35 21.45 0.29 -56.71 15 2 C 0.01 0.79 4.89 84.66 0.41 1.20 15 3 Si 1.11 51.98 29.91 68.60 2.05 54.03 15 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 15 7 C -0.62 -33.48 6.95 25.60 0.18 -33.31 15 8 H 0.03 1.86 7.77 -2.91 -0.02 1.84 15 9 C 0.22 10.60 0.62 -10.47 -0.01 10.59 15 10 O -0.59 -30.02 11.39 -148.98 -1.70 -31.72 15 11 C -0.14 -5.44 6.01 31.88 0.19 -5.25 15 12 C -0.11 -3.76 6.81 31.67 0.22 -3.54 15 13 C -0.15 -5.35 6.58 31.32 0.21 -5.14 15 14 C 0.11 5.09 2.89 45.64 0.13 5.22 15 15 H 0.03 1.66 7.09 -2.39 -0.02 1.64 15 16 N -0.82 -34.96 7.68 -165.67 -1.27 -36.24 15 17 H 0.27 17.17 4.93 -92.71 -0.46 16.71 15 18 H 0.36 16.93 9.05 -74.05 -0.67 16.26 15 19 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.06 2.44 8.05 -2.39 -0.02 2.42 15 21 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.07 2.25 7.92 -2.39 -0.02 2.23 15 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.33 12.10 9.07 -89.69 -0.81 11.29 15 26 H 0.34 13.67 8.69 -89.70 -0.78 12.89 15 Total: -1.00 -64.21 213.53 -0.06 -64.27 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.75 Total: 36.59 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 1.33 Total: -30.23 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -0.99 Total: -92.94 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.70 Total: -31.72 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.05 Total: 54.03 kcal Total: -64.21 -0.06 -64.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740964.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.194 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds