Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48498 * 109.47265 * 90.00111 * 3 2 1 5 5 H 1.48500 * 109.47084 * 210.00085 * 3 2 1 6 6 H 1.48500 * 109.47062 * 330.00360 * 3 2 1 7 7 C 1.39872 * 119.99874 * 180.27927 * 2 1 3 8 8 H 1.08001 * 120.00218 * 14.90079 * 7 2 1 9 9 C 1.41153 * 119.99710 * 194.89922 * 7 2 1 10 10 N 1.32212 * 120.83356 * 8.70319 * 9 7 2 11 11 S 1.70027 * 105.77744 * 179.97438 * 10 9 7 12 12 C 1.77367 * 94.35417 * 0.02562 * 11 10 9 13 13 N 1.37997 * 127.69416 * 180.02562 * 12 11 10 14 14 N 1.31359 * 104.60453 * 359.74541 * 12 11 10 15 15 H 0.97002 * 120.00054 * 174.80144 * 1 2 3 16 16 H 0.96998 * 120.00640 * 359.96584 * 13 12 11 17 17 H 0.97000 * 119.99883 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0464 1.4000 5 1 3.5401 1.4402 -0.7001 6 1 1.4399 2.6527 -0.7000 7 6 2.0079 -1.2113 -0.0059 8 1 1.4952 -2.1297 -0.2509 9 6 3.3839 -1.2334 0.3083 10 7 3.9898 -0.1548 0.7747 11 16 5.6114 -0.6044 1.0181 12 6 5.3743 -2.2711 0.4599 13 7 6.3169 -3.2756 0.3777 14 7 4.1000 -2.3378 0.1479 15 1 -0.4850 -0.8366 -0.0761 16 1 7.2337 -3.1035 0.6438 17 1 6.0628 -4.1538 0.0537 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810384.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = 31.079018 kcal Electronic energy + Delta-G solvation = -7762.938244 eV Core-core repulsion = 6048.246634 eV Total energy + Delta-G solvation = -1714.691610 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.016 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.32057 -34.70209 -33.15762 -29.65359 -26.74883 -22.54721 -19.61632 -18.14981 -17.43723 -15.71377 -15.50347 -14.09352 -13.69319 -12.95407 -12.51467 -11.26433 -10.98630 -10.76115 -10.17706 -9.71320 -9.16874 -9.03784 -8.33341 -8.05666 -7.41409 -7.30147 -4.84496 2.08221 2.14153 3.22457 3.52732 3.71502 3.93664 4.14518 4.20071 4.61785 5.28344 5.93637 7.18132 7.44301 7.51607 7.66571 8.01294 8.23440 8.53690 9.36019 10.03451 Molecular weight = 171.02amu Principal moments of inertia in cm(-1) A = 0.079381 B = 0.019685 C = 0.016133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.646325 B = 1422.063243 C = 1735.195146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.057 3.943 3 Si 1.116 2.884 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.313 1.313 7 C -0.451 4.451 8 H 0.089 0.911 9 C 0.381 3.619 10 N -0.597 5.597 11 S -0.006 6.006 12 C 0.364 3.636 13 N -0.813 5.813 14 N -0.581 5.581 15 H 0.285 0.715 16 H 0.412 0.588 17 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 -3.241 0.164 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.166 4.166 3 Si 0.946 3.054 4 H -0.206 1.206 5 H -0.191 1.191 6 H -0.244 1.244 7 C -0.497 4.497 8 H 0.107 0.893 9 C 0.128 3.872 10 N -0.443 5.443 11 S 0.119 5.881 12 C -0.021 4.021 13 N -0.365 5.365 14 N -0.314 5.314 15 H 0.096 0.904 16 H 0.242 0.758 17 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 8.933 -0.528 0.623 8.970 hybrid contribution -0.036 -2.983 -0.359 3.005 sum 8.897 -3.511 0.264 9.568 Atomic orbital electron populations 1.70658 1.07792 1.32913 1.31407 1.27456 0.95320 1.05146 0.88676 0.82559 0.73478 0.70698 0.78638 1.20609 1.19121 1.24397 1.19991 0.90005 0.97455 1.42201 0.89313 1.19897 0.95485 0.81467 0.90353 1.77493 0.95742 1.23311 1.47723 1.85102 1.22665 1.06452 1.73866 1.25772 0.90456 0.93061 0.92814 1.41075 1.09364 1.11599 1.74459 1.67733 1.02388 1.30521 1.30800 0.90366 0.75787 0.76417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.46 13.66 55.54 0.76 -21.71 13 2 C 0.06 1.62 5.51 -17.35 -0.10 1.52 13 3 Si 1.12 28.72 26.03 -169.99 -4.43 24.29 13 4 H -0.28 -7.28 7.11 56.52 0.40 -6.87 13 5 H -0.26 -6.97 6.48 56.52 0.37 -6.60 13 6 H -0.31 -7.67 7.11 56.52 0.40 -7.27 13 7 C -0.45 -13.07 9.77 -37.87 -0.37 -13.44 13 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 13 9 C 0.38 10.75 6.94 -160.30 -1.11 9.64 13 10 N -0.60 -16.53 6.98 28.99 0.20 -16.33 13 11 S -0.01 -0.13 24.02 -107.50 -2.58 -2.72 13 12 C 0.36 7.63 9.26 -86.89 -0.80 6.82 13 13 N -0.81 -11.46 9.05 31.20 0.28 -11.18 13 14 N -0.58 -14.83 10.59 -14.10 -0.15 -14.98 13 15 H 0.28 7.62 8.73 -40.82 -0.36 7.26 13 16 H 0.41 4.31 8.95 -40.82 -0.37 3.94 13 17 H 0.40 4.93 8.95 -40.82 -0.37 4.56 13 LS Contribution 177.19 15.07 2.67 2.67 Total: -1.00 -32.24 177.19 -5.97 -38.21 By element: Atomic # 1 Polarization: -2.47 SS G_CDS: -0.34 Total: -2.81 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.38 Total: 4.55 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: 1.09 Total: -64.19 kcal Atomic # 14 Polarization: 28.72 SS G_CDS: -4.43 Total: 24.29 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.58 Total: -2.72 kcal Total LS contribution 2.67 Total: 2.67 kcal Total: -32.24 -5.97 -38.21 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810384.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.288 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds