Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86796 * 119.99861 * 2 1 4 4 H 1.48498 * 109.47265 * 90.00111 * 3 2 1 5 5 H 1.48500 * 109.47084 * 210.00085 * 3 2 1 6 6 H 1.48500 * 109.47062 * 330.00360 * 3 2 1 7 7 C 1.39872 * 119.99874 * 180.27927 * 2 1 3 8 8 H 1.08001 * 120.00218 * 14.90079 * 7 2 1 9 9 C 1.41153 * 119.99710 * 194.89922 * 7 2 1 10 10 N 1.32212 * 120.83356 * 8.70319 * 9 7 2 11 11 S 1.70027 * 105.77744 * 179.97438 * 10 9 7 12 12 C 1.77367 * 94.35417 * 0.02562 * 11 10 9 13 13 N 1.37997 * 127.69416 * 180.02562 * 12 11 10 14 14 N 1.31359 * 104.60453 * 359.74541 * 12 11 10 15 15 H 0.97002 * 120.00054 * 174.80144 * 1 2 3 16 16 H 0.96998 * 120.00640 * 359.96584 * 13 12 11 17 17 H 0.97000 * 119.99883 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0464 1.4000 5 1 3.5401 1.4402 -0.7001 6 1 1.4399 2.6527 -0.7000 7 6 2.0079 -1.2113 -0.0059 8 1 1.4952 -2.1297 -0.2509 9 6 3.3839 -1.2334 0.3083 10 7 3.9898 -0.1548 0.7747 11 16 5.6114 -0.6044 1.0181 12 6 5.3743 -2.2711 0.4599 13 7 6.3169 -3.2756 0.3777 14 7 4.1000 -2.3378 0.1479 15 1 -0.4850 -0.8366 -0.0761 16 1 7.2337 -3.1035 0.6438 17 1 6.0628 -4.1538 0.0537 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810384.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = 6.491463 kcal Electronic energy + Delta-G solvation = -7764.004441 eV Core-core repulsion = 6048.246634 eV Total energy + Delta-G solvation = -1715.757807 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.016 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -40.24518 -36.41144 -35.10581 -31.54403 -28.83509 -24.37672 -21.51618 -20.03560 -19.36380 -17.47202 -17.00692 -16.07756 -15.63264 -14.97860 -14.57089 -13.17436 -12.93363 -12.70967 -12.04839 -11.78707 -11.21875 -10.97874 -10.20975 -9.99610 -9.49578 -9.11353 -6.97033 0.24561 0.36980 1.25006 1.48498 1.72444 2.03906 2.12464 2.39866 2.71609 3.16299 4.27176 5.22249 5.41658 5.77708 5.93034 6.11686 6.41830 6.63232 7.44715 7.90704 Molecular weight = 171.02amu Principal moments of inertia in cm(-1) A = 0.079381 B = 0.019685 C = 0.016133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.646325 B = 1422.063243 C = 1735.195146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 1.153 2.847 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.297 1.297 7 C -0.485 4.485 8 H 0.070 0.930 9 C 0.381 3.619 10 N -0.635 5.635 11 S 0.031 5.969 12 C 0.382 3.618 13 N -0.771 5.771 14 N -0.622 5.622 15 H 0.284 0.716 16 H 0.434 0.566 17 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 -3.638 0.326 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.187 4.187 3 Si 0.982 3.018 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.227 1.227 7 C -0.530 4.530 8 H 0.088 0.912 9 C 0.124 3.876 10 N -0.480 5.480 11 S 0.156 5.844 12 C -0.003 4.003 13 N -0.326 5.326 14 N -0.358 5.358 15 H 0.095 0.905 16 H 0.269 0.731 17 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.093 -0.973 0.787 11.163 hybrid contribution -0.403 -3.016 -0.363 3.064 sum 10.691 -3.989 0.424 11.418 Atomic orbital electron populations 1.70666 1.07917 1.32938 1.32879 1.28147 0.95605 1.06642 0.88265 0.82061 0.72423 0.69276 0.78050 1.21335 1.20317 1.22681 1.19963 0.91154 0.97105 1.44784 0.91171 1.19936 0.95562 0.82368 0.89717 1.77292 0.99004 1.24443 1.47280 1.84759 1.19024 1.06967 1.73606 1.25919 0.90066 0.93699 0.90595 1.41155 1.09144 1.10662 1.71593 1.67700 1.04079 1.29941 1.34090 0.90451 0.73087 0.74484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.41 13.66 21.81 0.30 -46.11 13 2 C 0.03 1.90 5.51 85.23 0.47 2.37 13 3 Si 1.15 58.52 26.03 68.60 1.79 60.30 13 4 H -0.29 -14.66 7.11 99.48 0.71 -13.95 13 5 H -0.28 -14.31 6.48 99.48 0.65 -13.67 13 6 H -0.30 -14.00 7.11 99.48 0.71 -13.29 13 7 C -0.49 -28.66 9.77 23.38 0.23 -28.43 13 8 H 0.07 4.26 8.06 -2.91 -0.02 4.23 13 9 C 0.38 21.36 6.94 135.68 0.94 22.30 13 10 N -0.63 -34.49 6.98 -62.18 -0.43 -34.93 13 11 S 0.03 1.30 24.02 -56.49 -1.36 -0.06 13 12 C 0.38 14.82 9.26 179.05 1.66 16.48 13 13 N -0.77 -18.20 9.05 -55.19 -0.50 -18.70 13 14 N -0.62 -30.87 10.59 -198.51 -2.10 -32.97 13 15 H 0.28 15.58 8.73 -92.71 -0.81 14.77 13 16 H 0.43 6.75 8.95 -92.71 -0.83 5.92 13 17 H 0.42 8.27 8.95 -92.71 -0.83 7.44 13 Total: -1.00 -68.83 177.19 0.55 -68.27 By element: Atomic # 1 Polarization: -8.10 SS G_CDS: -0.43 Total: -8.54 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 3.30 Total: 12.72 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -2.74 Total: -132.70 kcal Atomic # 14 Polarization: 58.52 SS G_CDS: 1.79 Total: 60.30 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.36 Total: -0.06 kcal Total: -68.83 0.55 -68.27 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810384.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.762 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds