Wall clock time and date at job start Mon Mar 30 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 11 11 N 1.46894 * 109.46702 * 300.00062 * 9 7 2 12 12 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 13 13 H 1.09002 * 109.46857 * 60.00224 * 12 9 7 14 14 O 1.42895 * 109.46995 * 300.00380 * 12 9 7 15 15 C 1.52996 * 109.46929 * 179.97438 * 12 9 7 16 16 C 1.52998 * 117.49799 * 248.62141 * 15 12 9 17 17 C 1.52998 * 60.00347 * 252.51403 * 16 15 12 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.00907 * 110.99654 * 176.04446 * 11 9 7 20 20 H 1.00901 * 111.00146 * 299.99618 * 11 9 7 21 21 H 0.96703 * 113.99844 * 299.99180 * 14 12 9 22 22 H 1.09000 * 115.54892 * 34.33433 * 15 12 9 23 23 H 1.08997 * 117.50055 * 0.02562 * 16 15 12 24 24 H 1.08999 * 117.49983 * 145.02501 * 16 15 12 25 25 H 1.09002 * 117.50027 * 252.51569 * 17 16 15 26 26 H 1.08995 * 117.50395 * 107.48750 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4062 -2.5767 1.1996 12 6 2.2454 -3.6621 0.0005 13 1 2.8720 -3.6043 0.8906 14 8 3.0669 -3.5863 -1.1662 15 6 1.4803 -4.9870 0.0012 16 6 1.5560 -5.8458 1.2652 17 6 2.3025 -6.2774 0.0013 18 1 -0.4850 -0.8401 -0.0004 19 1 -0.1578 -3.4134 1.1911 20 1 0.9638 -2.5251 2.0389 21 1 2.5748 -3.6317 -1.9974 22 1 0.5418 -4.9883 -0.5532 23 1 2.1504 -5.4667 2.0964 24 1 0.6671 -6.4122 1.5428 25 1 1.9046 -7.1277 -0.5526 26 1 3.3883 -6.1824 0.0009 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826344.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:29 Heat of formation + Delta-G solvation = -35.986537 kcal Electronic energy + Delta-G solvation = -10197.807820 eV Core-core repulsion = 8276.828596 eV Total energy + Delta-G solvation = -1920.979224 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.26400 -35.08709 -33.87507 -31.04937 -26.66774 -24.65895 -22.15925 -21.22108 -20.17215 -16.87777 -15.97296 -15.12778 -14.90011 -13.82724 -13.66306 -13.49873 -12.78383 -11.68428 -11.53815 -11.36150 -10.96794 -10.65840 -10.32453 -10.16681 -10.01914 -9.76613 -9.42437 -8.47198 -8.23171 -7.26808 -6.09097 -3.90255 3.53168 3.54954 3.73604 3.99065 4.65872 4.95930 5.05584 5.18894 5.45442 5.55754 5.74675 5.77819 6.04024 6.15340 6.19579 6.28770 6.45962 6.57243 7.27315 8.06101 8.29907 8.51672 8.76351 8.84026 9.15266 9.92808 11.30542 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077385 B = 0.013507 C = 0.012286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.741547 B = 2072.569057 C = 2278.501084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.034 3.966 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.605 4.605 8 H 0.049 0.951 9 C 0.185 3.815 10 H 0.026 0.974 11 N -0.827 5.827 12 C 0.114 3.886 13 H 0.080 0.920 14 O -0.555 6.555 15 C -0.187 4.187 16 C -0.177 4.177 17 C -0.174 4.174 18 H 0.288 0.712 19 H 0.300 0.700 20 H 0.324 0.676 21 H 0.365 0.635 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -8.901 0.456 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.644 4.644 8 H 0.067 0.933 9 C 0.076 3.924 10 H 0.043 0.957 11 N -0.356 5.356 12 C 0.053 3.947 13 H 0.097 0.903 14 O -0.357 6.357 15 C -0.206 4.206 16 C -0.214 4.214 17 C -0.211 4.211 18 H 0.100 0.900 19 H 0.111 0.889 20 H 0.136 0.864 21 H 0.211 0.789 22 H 0.117 0.883 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.306 -6.538 0.621 6.960 hybrid contribution 0.251 -2.717 -0.106 2.731 sum 2.557 -9.255 0.515 9.615 Atomic orbital electron populations 1.70563 1.06852 1.32580 1.43091 1.25612 0.96627 1.01933 0.93327 0.83644 0.74863 0.75838 0.76289 1.21072 1.21766 1.21742 1.21717 0.93611 0.90891 1.58212 0.93308 1.19794 0.89445 0.93243 0.89950 0.95666 1.59374 1.28738 1.42183 1.05274 1.22514 0.92733 0.91391 0.88075 0.90254 1.86473 1.36986 1.96520 1.15766 1.23357 1.01488 0.93924 1.01833 1.22877 1.02634 1.04000 0.91902 1.22787 0.99134 0.97910 1.01233 0.89995 0.88885 0.86390 0.78911 0.88304 0.89050 0.89177 0.89462 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.51 55.43 0.75 -26.82 15 2 C 0.03 0.99 5.39 -17.82 -0.10 0.90 15 3 Si 1.06 25.97 29.90 -169.99 -5.08 20.89 15 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.61 -17.23 8.39 -34.44 -0.29 -17.52 15 8 H 0.05 1.43 7.70 -52.48 -0.40 1.03 15 9 C 0.18 4.52 2.04 -68.87 -0.14 4.38 15 10 H 0.03 0.67 8.01 -51.93 -0.42 0.26 15 11 N -0.83 -18.89 7.72 -5.65 -0.04 -18.93 15 12 C 0.11 2.36 2.85 -26.73 -0.08 2.28 15 13 H 0.08 1.74 7.90 -51.93 -0.41 1.33 15 14 O -0.56 -11.72 12.84 -35.23 -0.45 -12.17 15 15 C -0.19 -3.13 4.34 -90.62 -0.39 -3.52 15 16 C -0.18 -2.53 10.18 -26.73 -0.27 -2.81 15 17 C -0.17 -2.50 10.16 -26.73 -0.27 -2.77 15 18 H 0.29 8.83 6.39 -40.82 -0.26 8.57 15 19 H 0.30 6.00 8.13 -39.29 -0.32 5.68 15 20 H 0.32 7.25 8.99 -39.29 -0.35 6.90 15 21 H 0.37 6.63 9.05 45.56 0.41 7.04 15 22 H 0.10 1.65 8.11 -51.93 -0.42 1.23 15 23 H 0.09 1.31 8.05 -51.93 -0.42 0.90 15 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 LS Contribution 225.37 15.07 3.40 3.40 Total: -1.00 -31.23 225.37 -5.63 -36.85 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -2.65 Total: 15.84 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.54 Total: -19.06 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.70 Total: -45.75 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.45 Total: -12.17 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.89 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -31.23 -5.63 -36.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826344.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.866 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds