Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 11 11 N 1.46902 * 109.47091 * 60.00543 * 9 7 2 12 12 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 13 13 H 1.09000 * 109.47026 * 64.99845 * 12 9 7 14 14 O 1.42897 * 109.47239 * 305.00337 * 12 9 7 15 15 C 1.52996 * 109.47406 * 185.00246 * 12 9 7 16 16 C 1.53007 * 117.49786 * 248.74825 * 15 12 9 17 17 C 1.53001 * 117.50078 * 180.09091 * 15 12 9 18 18 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 19 19 H 1.00904 * 110.99840 * 296.04141 * 11 9 7 20 20 H 1.00902 * 111.00267 * 59.99500 * 11 9 7 21 21 H 0.96700 * 113.99939 * 299.99871 * 14 12 9 22 22 H 1.08997 * 115.55098 * 34.41582 * 15 12 9 23 23 H 1.08993 * 117.49969 * 359.97438 * 16 15 12 24 24 H 1.09003 * 117.49411 * 145.01804 * 16 15 12 25 25 H 1.09004 * 117.49949 * 214.98029 * 17 15 12 26 26 H 1.08997 * 117.49820 * 359.97438 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6281 -2.5552 0.8979 11 7 0.4015 -2.5793 -1.1905 12 6 2.2452 -3.6621 0.0027 13 1 2.8157 -3.6544 0.9315 14 8 3.1371 -3.5240 -1.1052 15 6 1.4838 -4.9838 -0.1172 16 6 1.4799 -5.9098 1.1008 17 6 2.3063 -6.2738 -0.1352 18 1 -0.4850 0.8401 0.0004 19 1 -0.3058 -1.8598 -1.1805 20 1 0.9560 -2.5296 -2.0321 21 1 2.6972 -3.5228 -1.9664 22 1 0.5823 -4.9531 -0.7291 23 1 2.0200 -5.5777 1.9873 24 1 0.5758 -6.4886 1.2899 25 1 1.9456 -7.0920 -0.7587 26 1 3.3898 -6.1809 -0.0620 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826345.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = -37.735188 kcal Electronic energy + Delta-G solvation = -10187.415594 eV Core-core repulsion = 8266.360543 eV Total energy + Delta-G solvation = -1921.055051 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.95889 -35.01752 -33.50108 -30.91482 -26.95200 -25.14509 -21.91008 -21.04160 -19.48724 -16.48585 -15.71318 -15.60148 -14.44933 -13.97884 -13.79724 -12.74075 -12.52537 -11.91014 -11.35787 -11.11478 -10.97347 -10.80249 -10.30964 -10.20141 -9.87089 -9.69006 -9.45524 -8.69943 -8.51510 -7.18830 -6.02860 -4.16222 3.28553 3.32941 3.36971 4.30817 4.39572 5.18742 5.26851 5.34586 5.53272 5.73696 6.02980 6.13980 6.30658 6.38621 6.53034 6.54516 6.91318 7.03340 7.65512 7.83923 8.18118 8.62516 8.72834 9.00007 9.10596 9.53969 10.96275 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.078873 B = 0.013170 C = 0.012464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.917141 B = 2125.453816 C = 2245.978634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.184 3.816 10 H 0.042 0.958 11 N -0.850 5.850 12 C 0.146 3.854 13 H 0.079 0.921 14 O -0.560 6.560 15 C -0.165 4.165 16 C -0.183 4.183 17 C -0.184 4.184 18 H 0.264 0.736 19 H 0.355 0.645 20 H 0.306 0.694 21 H 0.365 0.635 22 H 0.118 0.882 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 -6.622 -0.923 6.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.074 3.926 10 H 0.060 0.940 11 N -0.380 5.380 12 C 0.087 3.913 13 H 0.097 0.903 14 O -0.364 6.364 15 C -0.184 4.184 16 C -0.220 4.220 17 C -0.221 4.221 18 H 0.073 0.927 19 H 0.171 0.829 20 H 0.115 0.885 21 H 0.211 0.789 22 H 0.136 0.864 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.852 -7.207 -0.139 7.442 hybrid contribution 0.325 1.938 -0.498 2.028 sum 2.177 -5.268 -0.637 5.736 Atomic orbital electron populations 1.69733 1.05850 1.27038 1.51311 1.25041 0.94901 0.99335 0.94729 0.86589 0.79509 0.82769 0.78681 1.20297 1.21398 1.20308 1.21876 0.93995 0.91439 1.50581 0.92238 1.19500 0.90646 0.90907 0.91588 0.94002 1.59512 1.18462 1.55941 1.04099 1.21599 0.90057 0.91119 0.88508 0.90325 1.86444 1.36853 1.96318 1.16766 1.23268 1.02115 0.91741 1.01254 1.22859 1.01948 1.04524 0.92700 1.22809 0.98370 0.99453 1.01429 0.92660 0.82853 0.88498 0.78918 0.86427 0.89348 0.89519 0.89806 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.19 11.53 55.43 0.64 -24.56 15 2 C 0.06 1.68 5.38 -17.82 -0.10 1.59 15 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.54 -14.77 8.32 -34.44 -0.29 -15.06 15 8 H 0.06 1.68 7.56 -52.49 -0.40 1.28 15 9 C 0.18 4.54 2.66 -68.86 -0.18 4.36 15 10 H 0.04 1.15 8.14 -51.93 -0.42 0.73 15 11 N -0.85 -19.55 8.11 -5.65 -0.05 -19.59 15 12 C 0.15 3.12 3.03 -26.73 -0.08 3.04 15 13 H 0.08 1.73 7.90 -51.93 -0.41 1.32 15 14 O -0.56 -11.83 12.59 -35.23 -0.44 -12.27 15 15 C -0.17 -3.02 5.22 -90.62 -0.47 -3.49 15 16 C -0.18 -2.92 10.18 -26.69 -0.27 -3.19 15 17 C -0.18 -2.87 10.16 -26.69 -0.27 -3.14 15 18 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 19 H 0.36 8.98 7.07 -39.29 -0.28 8.70 15 20 H 0.31 6.65 7.66 -39.29 -0.30 6.35 15 21 H 0.36 6.82 7.71 45.56 0.35 7.18 15 22 H 0.12 2.25 7.30 -51.93 -0.38 1.87 15 23 H 0.09 1.38 8.05 -51.93 -0.42 0.97 15 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 15 26 H 0.09 1.42 8.14 -51.93 -0.42 0.99 15 LS Contribution 222.15 15.07 3.35 3.35 Total: -1.00 -27.85 222.15 -5.84 -33.69 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -2.66 Total: 18.82 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -1.66 Total: -15.90 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.59 Total: -44.15 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.44 Total: -12.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -27.85 -5.84 -33.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826345.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.042 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds