Wall clock time and date at job start Mon Mar 30 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 11 11 N 1.46902 * 109.47091 * 60.00543 * 9 7 2 12 12 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 13 13 H 1.09000 * 109.47026 * 64.99845 * 12 9 7 14 14 O 1.42897 * 109.47239 * 305.00337 * 12 9 7 15 15 C 1.52996 * 109.47406 * 185.00246 * 12 9 7 16 16 C 1.53007 * 117.49786 * 248.74825 * 15 12 9 17 17 C 1.53001 * 117.50078 * 180.09091 * 15 12 9 18 18 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 19 19 H 1.00904 * 110.99840 * 296.04141 * 11 9 7 20 20 H 1.00902 * 111.00267 * 59.99500 * 11 9 7 21 21 H 0.96700 * 113.99939 * 299.99871 * 14 12 9 22 22 H 1.08997 * 115.55098 * 34.41582 * 15 12 9 23 23 H 1.08993 * 117.49969 * 359.97438 * 16 15 12 24 24 H 1.09003 * 117.49411 * 145.01804 * 16 15 12 25 25 H 1.09004 * 117.49949 * 214.98029 * 17 15 12 26 26 H 1.08997 * 117.49820 * 359.97438 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6281 -2.5552 0.8979 11 7 0.4015 -2.5793 -1.1905 12 6 2.2452 -3.6621 0.0027 13 1 2.8157 -3.6544 0.9315 14 8 3.1371 -3.5240 -1.1052 15 6 1.4838 -4.9838 -0.1172 16 6 1.4799 -5.9098 1.1008 17 6 2.3063 -6.2738 -0.1352 18 1 -0.4850 0.8401 0.0004 19 1 -0.3058 -1.8598 -1.1805 20 1 0.9560 -2.5296 -2.0321 21 1 2.6972 -3.5228 -1.9664 22 1 0.5823 -4.9531 -0.7291 23 1 2.0200 -5.5777 1.9873 24 1 0.5758 -6.4886 1.2899 25 1 1.9456 -7.0920 -0.7587 26 1 3.3898 -6.1809 -0.0620 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826345.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:30 Heat of formation + Delta-G solvation = -58.666432 kcal Electronic energy + Delta-G solvation = -10188.323241 eV Core-core repulsion = 8266.360543 eV Total energy + Delta-G solvation = -1921.962698 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.55913 -36.58815 -35.40295 -32.92309 -28.80077 -27.08786 -23.19270 -22.75379 -21.15794 -18.50914 -17.54305 -17.15144 -16.39098 -15.64752 -15.39602 -14.61474 -14.20560 -13.56288 -13.29919 -12.90333 -12.73163 -12.37062 -12.23226 -11.99580 -11.52859 -11.26778 -10.88434 -10.68899 -10.35024 -9.16531 -8.10297 -6.33263 1.38113 1.38481 1.47038 2.37805 2.98000 3.07867 3.82335 3.89226 4.16414 4.28142 4.45389 4.66843 4.82314 4.92632 5.03068 5.07335 5.33045 5.47828 5.68285 5.71423 6.12904 6.68722 6.91050 7.04989 7.12596 7.41368 8.84477 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.078873 B = 0.013170 C = 0.012464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.917141 B = 2125.453816 C = 2245.978634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.558 4.558 8 H 0.046 0.954 9 C 0.186 3.814 10 H 0.008 0.992 11 N -0.834 5.834 12 C 0.156 3.844 13 H 0.068 0.932 14 O -0.567 6.567 15 C -0.186 4.186 16 C -0.177 4.177 17 C -0.161 4.161 18 H 0.265 0.735 19 H 0.343 0.657 20 H 0.315 0.685 21 H 0.375 0.625 22 H 0.110 0.890 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -7.182 -1.212 7.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.597 4.597 8 H 0.064 0.936 9 C 0.075 3.925 10 H 0.026 0.974 11 N -0.363 5.363 12 C 0.096 3.904 13 H 0.086 0.914 14 O -0.373 6.373 15 C -0.205 4.205 16 C -0.214 4.214 17 C -0.198 4.198 18 H 0.075 0.925 19 H 0.158 0.842 20 H 0.125 0.875 21 H 0.222 0.778 22 H 0.128 0.872 23 H 0.107 0.893 24 H 0.123 0.877 25 H 0.126 0.874 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.295 -7.783 -0.440 8.126 hybrid contribution 0.184 2.103 -0.405 2.150 sum 2.479 -5.680 -0.845 6.254 Atomic orbital electron populations 1.69830 1.06821 1.27780 1.51445 1.25734 0.95732 1.02302 0.94383 0.85643 0.78361 0.79174 0.78566 1.19921 1.20735 1.20255 1.22101 0.93517 0.93053 1.51057 0.93556 1.19394 0.90690 0.91628 0.90769 0.97407 1.59447 1.17860 1.54994 1.03990 1.21324 0.89182 0.91608 0.88245 0.91427 1.86410 1.37165 1.96412 1.17299 1.22976 1.02395 0.91354 1.03731 1.22992 1.02844 1.03264 0.92322 1.22870 0.98089 0.97902 1.00975 0.92537 0.84239 0.87533 0.77763 0.87243 0.89316 0.87670 0.87439 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.50 11.53 21.45 0.25 -51.26 15 2 C 0.02 0.99 5.38 84.66 0.46 1.44 15 3 Si 0.96 43.86 29.54 68.60 2.03 45.89 15 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 15 7 C -0.56 -30.73 8.32 25.60 0.21 -30.52 15 8 H 0.05 2.63 7.56 -2.92 -0.02 2.61 15 9 C 0.19 9.28 2.66 44.17 0.12 9.39 15 10 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 11 N -0.83 -38.36 8.11 -171.80 -1.39 -39.75 15 12 C 0.16 6.59 3.03 30.59 0.09 6.68 15 13 H 0.07 2.98 7.90 -2.39 -0.02 2.96 15 14 O -0.57 -23.51 12.59 -148.98 -1.88 -25.38 15 15 C -0.19 -6.55 5.22 -10.79 -0.06 -6.61 15 16 C -0.18 -5.27 10.18 30.62 0.31 -4.96 15 17 C -0.16 -4.60 10.16 30.62 0.31 -4.29 15 18 H 0.27 14.23 8.31 -92.71 -0.77 13.46 15 19 H 0.34 17.44 7.07 -89.69 -0.63 16.81 15 20 H 0.32 13.53 7.66 -89.69 -0.69 12.85 15 21 H 0.37 13.62 7.71 -74.06 -0.57 13.05 15 22 H 0.11 4.06 7.30 -2.39 -0.02 4.04 15 23 H 0.09 2.63 8.05 -2.39 -0.02 2.61 15 24 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.11 2.58 8.14 -2.39 -0.02 2.56 15 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 Total: -1.00 -57.87 222.15 -0.25 -58.11 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.70 Total: 41.24 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 1.45 Total: -28.85 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -1.15 Total: -91.01 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.88 Total: -25.38 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -57.87 -0.25 -58.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826345.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.554 kcal (2) G-P(sol) polarization free energy of solvation -57.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds