Wall clock time and date at job start Mon Mar 30 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86807 * 119.99874 * 2 1 4 4 H 1.48500 * 109.46852 * 269.99873 * 3 2 1 5 5 H 1.48494 * 109.47112 * 30.00104 * 3 2 1 6 6 H 1.48500 * 109.46580 * 150.00088 * 3 2 1 7 7 C 1.37873 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99366 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00286 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46996 * 299.99954 * 9 7 2 11 11 N 1.46899 * 109.47293 * 59.99932 * 9 7 2 12 12 C 1.53003 * 109.47376 * 179.97438 * 9 7 2 13 13 H 1.08999 * 109.47269 * 300.00091 * 12 9 7 14 14 O 1.42903 * 109.46459 * 59.99985 * 12 9 7 15 15 C 1.53001 * 109.47376 * 179.97438 * 12 9 7 16 16 C 1.52998 * 117.49852 * 248.75205 * 15 12 9 17 17 C 1.52995 * 117.49875 * 180.09136 * 15 12 9 18 18 H 0.96999 * 119.99740 * 0.02562 * 1 2 3 19 19 H 1.00898 * 110.99923 * 296.04793 * 11 9 7 20 20 H 1.00900 * 111.00386 * 59.99772 * 11 9 7 21 21 H 0.96700 * 114.00311 * 60.00313 * 14 12 9 22 22 H 1.08995 * 115.54610 * 34.41516 * 15 12 9 23 23 H 1.09001 * 117.49846 * 359.97438 * 16 15 12 24 24 H 1.08994 * 117.50309 * 145.02432 * 16 15 12 25 25 H 1.08997 * 117.49802 * 214.98515 * 17 15 12 26 26 H 1.09005 * 117.49788 * 359.97438 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8880 11 7 0.4070 -2.5761 -1.2015 12 6 2.2453 -3.6621 -0.0027 13 1 2.8719 -3.6036 -0.8926 14 8 3.0668 -3.5873 1.1642 15 6 1.4803 -4.9871 -0.0033 16 6 1.5534 -5.8456 1.2610 17 6 2.3023 -6.2774 -0.0022 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3004 -1.8566 -1.1928 20 1 0.9652 -2.5241 -2.0404 21 1 2.5746 -3.6334 1.9953 22 1 0.5425 -4.9882 -0.5588 23 1 2.1469 -5.4666 2.0931 24 1 0.6640 -6.4119 1.5371 25 1 1.9052 -7.1276 -0.5568 26 1 3.3882 -6.1824 -0.0015 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826347.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:32 Heat of formation + Delta-G solvation = -37.039875 kcal Electronic energy + Delta-G solvation = -10181.888632 eV Core-core repulsion = 8260.863732 eV Total energy + Delta-G solvation = -1921.024900 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.13945 -34.66167 -33.69680 -31.11247 -26.68471 -25.25550 -22.01870 -21.01814 -19.43655 -16.61850 -15.79089 -15.58358 -14.47241 -13.98808 -13.69292 -12.76648 -12.50689 -11.96983 -11.24648 -11.09329 -10.93097 -10.84939 -10.44696 -10.19111 -9.88837 -9.77963 -9.37592 -8.72350 -8.50989 -7.17780 -6.03143 -4.16927 3.25905 3.33179 3.38642 4.32751 4.39053 5.16165 5.26963 5.36636 5.51778 5.59008 6.01821 6.12399 6.34379 6.41777 6.55892 6.67009 6.89508 6.92558 7.67029 7.83325 8.19322 8.46509 8.79832 9.00089 9.13687 9.53531 10.95620 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.079362 B = 0.013333 C = 0.012266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.730428 B = 2099.474604 C = 2282.276680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.187 3.813 10 H 0.036 0.964 11 N -0.849 5.849 12 C 0.145 3.855 13 H 0.084 0.916 14 O -0.562 6.562 15 C -0.163 4.163 16 C -0.187 4.187 17 C -0.187 4.187 18 H 0.263 0.737 19 H 0.355 0.645 20 H 0.311 0.689 21 H 0.364 0.636 22 H 0.119 0.881 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -6.580 0.372 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.077 0.923 9 C 0.077 3.923 10 H 0.054 0.946 11 N -0.379 5.379 12 C 0.085 3.915 13 H 0.102 0.898 14 O -0.366 6.366 15 C -0.181 4.181 16 C -0.224 4.224 17 C -0.224 4.224 18 H 0.073 0.927 19 H 0.171 0.829 20 H 0.119 0.881 21 H 0.211 0.789 22 H 0.137 0.863 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.890 -7.147 0.229 7.397 hybrid contribution 0.301 1.913 0.209 1.948 sum 2.191 -5.234 0.438 5.691 Atomic orbital electron populations 1.69752 1.05848 1.26934 1.51353 1.25041 0.94902 0.99341 0.94719 0.86542 0.79952 0.83135 0.78045 1.20765 1.21260 1.19864 1.21932 0.93940 0.91528 1.50507 0.92321 1.19489 0.90508 0.90841 0.91506 0.94563 1.59424 1.18500 1.55888 1.04095 1.21452 0.91545 0.91244 0.87210 0.89826 1.86471 1.37529 1.96551 1.16017 1.23333 1.01906 0.92186 1.00709 1.22859 1.02314 1.04699 0.92522 1.22865 0.98820 0.99002 1.01726 0.92712 0.82948 0.88113 0.78884 0.86301 0.88869 0.89721 0.89901 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 11.54 55.43 0.64 -24.56 15 2 C 0.06 1.69 5.38 -17.82 -0.10 1.59 15 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.54 -14.78 8.39 -34.45 -0.29 -15.07 15 8 H 0.06 1.66 7.70 -52.48 -0.40 1.26 15 9 C 0.19 4.61 2.48 -68.87 -0.17 4.44 15 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 15 11 N -0.85 -19.94 8.37 -5.66 -0.05 -19.99 15 12 C 0.14 3.08 3.01 -26.73 -0.08 3.00 15 13 H 0.08 1.85 8.14 -51.93 -0.42 1.42 15 14 O -0.56 -11.79 12.08 -35.23 -0.43 -12.21 15 15 C -0.16 -2.98 5.58 -90.62 -0.51 -3.48 15 16 C -0.19 -2.95 9.74 -26.69 -0.26 -3.21 15 17 C -0.19 -2.94 10.19 -26.70 -0.27 -3.21 15 18 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 19 H 0.35 9.05 7.08 -39.29 -0.28 8.77 15 20 H 0.31 7.01 8.99 -39.29 -0.35 6.66 15 21 H 0.36 6.71 7.56 45.56 0.34 7.05 15 22 H 0.12 2.29 7.50 -51.93 -0.39 1.90 15 23 H 0.09 1.42 6.37 -51.93 -0.33 1.09 15 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.09 1.42 8.14 -51.93 -0.42 0.99 15 LS Contribution 221.84 15.07 3.34 3.34 Total: -1.00 -28.01 221.84 -5.85 -33.85 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -2.66 Total: 19.07 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.67 Total: -15.94 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.59 Total: -44.55 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.43 Total: -12.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.01 -5.85 -33.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826347.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.188 kcal (2) G-P(sol) polarization free energy of solvation -28.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds