Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86807 * 119.99874 * 2 1 4 4 H 1.48500 * 109.46852 * 269.99873 * 3 2 1 5 5 H 1.48494 * 109.47112 * 30.00104 * 3 2 1 6 6 H 1.48500 * 109.46580 * 150.00088 * 3 2 1 7 7 C 1.37873 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99366 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00286 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46996 * 299.99954 * 9 7 2 11 11 N 1.46899 * 109.47293 * 59.99932 * 9 7 2 12 12 C 1.53003 * 109.47376 * 179.97438 * 9 7 2 13 13 H 1.08999 * 109.47269 * 300.00091 * 12 9 7 14 14 O 1.42903 * 109.46459 * 59.99985 * 12 9 7 15 15 C 1.53001 * 109.47376 * 179.97438 * 12 9 7 16 16 C 1.52998 * 117.49852 * 248.75205 * 15 12 9 17 17 C 1.52995 * 117.49875 * 180.09136 * 15 12 9 18 18 H 0.96999 * 119.99740 * 0.02562 * 1 2 3 19 19 H 1.00898 * 110.99923 * 296.04793 * 11 9 7 20 20 H 1.00900 * 111.00386 * 59.99772 * 11 9 7 21 21 H 0.96700 * 114.00311 * 60.00313 * 14 12 9 22 22 H 1.08995 * 115.54610 * 34.41516 * 15 12 9 23 23 H 1.09001 * 117.49846 * 359.97438 * 16 15 12 24 24 H 1.08994 * 117.50309 * 145.02432 * 16 15 12 25 25 H 1.08997 * 117.49802 * 214.98515 * 17 15 12 26 26 H 1.09005 * 117.49788 * 359.97438 * 17 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8880 11 7 0.4070 -2.5761 -1.2015 12 6 2.2453 -3.6621 -0.0027 13 1 2.8719 -3.6036 -0.8926 14 8 3.0668 -3.5873 1.1642 15 6 1.4803 -4.9871 -0.0033 16 6 1.5534 -5.8456 1.2610 17 6 2.3023 -6.2774 -0.0022 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3004 -1.8566 -1.1928 20 1 0.9652 -2.5241 -2.0404 21 1 2.5746 -3.6334 1.9953 22 1 0.5425 -4.9882 -0.5588 23 1 2.1469 -5.4666 2.0931 24 1 0.6640 -6.4119 1.5371 25 1 1.9052 -7.1276 -0.5568 26 1 3.3882 -6.1824 -0.0015 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826347.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = -58.193986 kcal Electronic energy + Delta-G solvation = -10182.805943 eV Core-core repulsion = 8260.863732 eV Total energy + Delta-G solvation = -1921.942211 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.71173 -36.35541 -35.46643 -33.14545 -28.54241 -27.19124 -23.33916 -22.76371 -21.05350 -18.57883 -17.57495 -17.16305 -16.41316 -15.67360 -15.36583 -14.67683 -14.20099 -13.61696 -13.14091 -12.87303 -12.77174 -12.34771 -12.26698 -12.00641 -11.62552 -11.28793 -10.87472 -10.69155 -10.32628 -9.17881 -8.10819 -6.33957 1.35962 1.38302 1.48692 2.37497 3.01447 3.06694 3.69051 3.95017 4.16959 4.20507 4.50605 4.72711 4.81794 4.89210 5.04539 5.10550 5.35059 5.47092 5.67208 5.69196 6.13039 6.63835 6.89786 7.02793 7.12999 7.40819 8.84032 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.079362 B = 0.013333 C = 0.012266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.730428 B = 2099.474604 C = 2282.276680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.018 3.982 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.045 0.955 9 C 0.190 3.810 10 H 0.007 0.993 11 N -0.836 5.836 12 C 0.155 3.845 13 H 0.073 0.927 14 O -0.570 6.570 15 C -0.185 4.185 16 C -0.176 4.176 17 C -0.168 4.168 18 H 0.265 0.735 19 H 0.343 0.657 20 H 0.316 0.684 21 H 0.375 0.625 22 H 0.108 0.892 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 -7.121 0.460 7.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.597 4.597 8 H 0.063 0.937 9 C 0.079 3.921 10 H 0.025 0.975 11 N -0.365 5.365 12 C 0.096 3.904 13 H 0.091 0.909 14 O -0.375 6.375 15 C -0.204 4.204 16 C -0.213 4.213 17 C -0.205 4.205 18 H 0.075 0.925 19 H 0.158 0.842 20 H 0.125 0.875 21 H 0.223 0.777 22 H 0.126 0.874 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.320 -7.704 0.317 8.052 hybrid contribution 0.162 2.070 0.198 2.086 sum 2.482 -5.634 0.515 6.178 Atomic orbital electron populations 1.69844 1.06817 1.27726 1.51488 1.25733 0.95733 1.02310 0.94367 0.85591 0.78537 0.79454 0.78193 1.20060 1.20723 1.20098 1.22151 0.93432 0.93166 1.50995 0.93705 1.19417 0.90513 0.91551 0.90627 0.97505 1.59382 1.18009 1.55017 1.04045 1.21166 0.90595 0.91714 0.86971 0.90949 1.86433 1.37927 1.96622 1.16539 1.23028 1.01936 0.91843 1.03585 1.22989 1.03016 1.03271 0.92031 1.22932 0.98550 0.97658 1.01376 0.92533 0.84235 0.87497 0.77676 0.87371 0.88435 0.87922 0.87632 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.49 11.54 21.45 0.25 -51.25 15 2 C 0.02 0.99 5.38 84.65 0.46 1.44 15 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 15 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 7 C -0.56 -30.75 8.39 25.60 0.21 -30.53 15 8 H 0.04 2.55 7.70 -2.91 -0.02 2.53 15 9 C 0.19 9.44 2.48 44.17 0.11 9.55 15 10 H 0.01 0.38 8.14 -2.39 -0.02 0.36 15 11 N -0.84 -39.47 8.37 -171.81 -1.44 -40.91 15 12 C 0.15 6.54 3.01 30.60 0.09 6.63 15 13 H 0.07 3.19 8.14 -2.39 -0.02 3.17 15 14 O -0.57 -23.53 12.08 -148.98 -1.80 -25.33 15 15 C -0.19 -6.54 5.58 -10.80 -0.06 -6.60 15 16 C -0.18 -5.12 9.74 30.62 0.30 -4.82 15 17 C -0.17 -4.82 10.19 30.62 0.31 -4.51 15 18 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 19 H 0.34 17.67 7.08 -89.70 -0.63 17.04 15 20 H 0.32 14.30 8.99 -89.69 -0.81 13.49 15 21 H 0.37 13.54 7.56 -74.06 -0.56 12.98 15 22 H 0.11 4.06 7.50 -2.39 -0.02 4.04 15 23 H 0.10 2.74 6.37 -2.39 -0.02 2.73 15 24 H 0.10 2.62 8.14 -2.39 -0.02 2.60 15 25 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 26 H 0.09 2.57 8.14 -2.38 -0.02 2.55 15 Total: -1.00 -58.06 221.84 -0.35 -58.41 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.80 Total: 42.04 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 1.42 Total: -28.82 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -1.19 Total: -92.15 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.80 Total: -25.33 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.06 -0.35 -58.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826347.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.216 kcal (2) G-P(sol) polarization free energy of solvation -58.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds