Wall clock time and date at job start Mon Mar 30 2020 02:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.81736 * 300.70375 * 9 7 2 11 11 C 1.54378 * 109.83060 * 179.81188 * 9 7 2 12 12 C 1.55449 * 102.18618 * 219.18001 * 11 9 7 13 13 C 1.54944 * 100.98845 * 34.04256 * 12 11 9 14 14 H 1.08998 * 110.31387 * 82.52097 * 13 12 11 15 15 C 1.53002 * 110.39368 * 204.64794 * 13 12 11 16 16 N 1.46905 * 109.46929 * 182.21531 * 15 13 12 17 17 O 1.43241 * 109.82797 * 61.58603 * 9 7 2 18 18 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 19 19 H 1.08992 * 110.85326 * 337.32377 * 11 9 7 20 20 H 1.09001 * 110.84479 * 100.94325 * 11 9 7 21 21 H 1.09005 * 111.06124 * 276.12644 * 12 11 9 22 22 H 1.08995 * 111.18678 * 152.01255 * 12 11 9 23 23 H 1.08995 * 109.47176 * 302.21124 * 15 13 12 24 24 H 1.08995 * 109.47142 * 62.21843 * 15 13 12 25 25 H 1.00906 * 110.99946 * 56.04844 * 16 15 13 26 26 H 1.00899 * 110.99836 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6125 -2.5572 0.8820 11 6 2.2470 -3.6788 -0.0036 12 6 1.5563 -4.6880 -0.9633 13 6 0.8818 -3.7232 -1.9707 14 1 1.5987 -3.4043 -2.7273 15 6 -0.3215 -4.3985 -2.6318 16 7 -0.9129 -3.4866 -3.6201 17 8 0.4533 -2.5997 -1.1849 18 1 -0.4850 -0.8401 -0.0004 19 1 3.2144 -3.3684 -0.3982 20 1 2.3519 -4.1013 0.9957 21 1 0.8139 -5.2859 -0.4346 22 1 2.2890 -5.3245 -1.4592 23 1 0.0028 -5.3125 -3.1293 24 1 -1.0641 -4.6421 -1.8721 25 1 -0.2261 -3.1947 -4.2993 26 1 -1.7099 -3.9101 -4.0713 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827440.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:01 Heat of formation + Delta-G solvation = -84.852630 kcal Electronic energy + Delta-G solvation = -10281.879992 eV Core-core repulsion = 8358.781775 eV Total energy + Delta-G solvation = -1923.098217 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.13886 -35.79965 -34.41312 -32.74479 -30.23225 -26.90626 -24.44377 -22.30807 -21.79976 -19.06489 -17.48949 -17.14116 -15.72553 -15.64333 -15.49955 -15.30052 -14.44077 -13.84015 -13.73223 -12.90702 -12.60027 -12.42866 -12.20509 -11.91720 -11.75032 -11.60508 -10.96353 -10.59928 -9.85122 -9.46616 -8.59778 -6.38661 1.51597 1.61472 1.80491 2.59494 3.06966 3.40428 3.68429 3.82223 4.05323 4.19580 4.33661 4.42748 4.60162 4.76454 4.85921 4.88124 5.03809 5.23292 5.48836 5.99357 6.12196 6.26021 6.59865 6.65639 6.81435 7.56716 8.80320 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.056590 B = 0.015471 C = 0.013254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.672136 B = 1809.409957 C = 2112.014126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.025 4.025 3 Si 1.118 2.882 4 H -0.283 1.283 5 H -0.265 1.265 6 H -0.273 1.273 7 C -0.639 4.639 8 H 0.050 0.950 9 C 0.174 3.826 10 H -0.005 1.005 11 C -0.132 4.132 12 C -0.137 4.137 13 C 0.068 3.932 14 H 0.043 0.957 15 C 0.074 3.926 16 N -0.861 5.861 17 O -0.395 6.395 18 H 0.263 0.737 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.343 0.657 26 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -9.109 -4.699 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.226 4.226 3 Si 0.939 3.061 4 H -0.209 1.209 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.676 4.676 8 H 0.069 0.931 9 C 0.118 3.882 10 H 0.012 0.988 11 C -0.170 4.170 12 C -0.175 4.175 13 C 0.009 3.991 14 H 0.061 0.939 15 C -0.056 4.056 16 N -0.393 5.393 17 O -0.315 6.315 18 H 0.073 0.927 19 H 0.082 0.918 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.121 0.879 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.156 0.844 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.454 -6.892 -4.118 8.395 hybrid contribution 0.386 -2.409 -0.516 2.494 sum 2.840 -9.301 -4.634 10.773 Atomic orbital electron populations 1.70781 1.08023 1.30728 1.45997 1.27423 0.96643 1.06789 0.91733 0.82969 0.74133 0.71152 0.77894 1.20893 1.19014 1.19813 1.22675 0.94055 0.93512 1.57361 0.93148 1.20403 0.88748 0.94867 0.84172 0.98755 1.22995 0.98851 0.95006 1.00143 1.23228 1.00246 0.97253 0.96744 1.23037 0.95167 0.87045 0.93821 0.93926 1.21873 0.95511 0.93226 0.95018 1.58419 1.13306 1.46081 1.21484 1.88660 1.58998 1.48502 1.35379 0.92700 0.91841 0.90537 0.89986 0.87886 0.91671 0.91804 0.84379 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.82 13.55 21.45 0.29 -60.53 15 2 C -0.02 -1.52 5.41 84.65 0.46 -1.06 15 3 Si 1.12 52.72 29.90 68.60 2.05 54.78 15 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 15 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 7 C -0.64 -38.40 8.75 25.60 0.22 -38.17 15 8 H 0.05 2.93 7.52 -2.91 -0.02 2.91 15 9 C 0.17 9.53 2.94 30.32 0.09 9.61 15 10 H -0.01 -0.31 7.99 -2.38 -0.02 -0.33 15 11 C -0.13 -5.51 6.54 31.90 0.21 -5.30 15 12 C -0.14 -4.58 6.58 32.10 0.21 -4.36 15 13 C 0.07 2.71 3.62 31.26 0.11 2.83 15 14 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 15 C 0.07 2.40 6.50 86.30 0.56 2.96 15 16 N -0.86 -28.05 9.61 -186.72 -1.79 -29.85 15 17 O -0.39 -21.51 9.51 -148.98 -1.42 -22.92 15 18 H 0.26 17.99 6.54 -92.71 -0.61 17.39 15 19 H 0.06 2.65 7.66 -2.39 -0.02 2.63 15 20 H 0.08 2.87 8.14 -2.39 -0.02 2.85 15 21 H 0.08 2.50 8.06 -2.38 -0.02 2.48 15 22 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.34 10.36 8.99 -89.69 -0.81 9.56 15 26 H 0.35 8.92 9.08 -89.69 -0.81 8.11 15 Total: -1.00 -73.71 220.76 0.72 -73.00 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.28 Total: 19.02 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 1.87 Total: -33.50 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.50 Total: -90.37 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.42 Total: -22.92 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 2.05 Total: 54.78 kcal Total: -73.71 0.72 -73.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827440.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.854 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds