Wall clock time and date at job start Mon Mar 30 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.27592 * 60.64100 * 9 7 2 11 11 C 1.54950 * 110.30459 * 182.83620 * 9 7 2 12 12 C 1.55310 * 100.93879 * 155.36075 * 11 9 7 13 13 C 1.54377 * 102.25088 * 325.86073 * 12 11 9 14 14 H 1.08991 * 109.83366 * 261.84294 * 13 12 11 15 15 C 1.53005 * 109.90550 * 140.91502 * 13 12 11 16 16 N 1.46889 * 109.47505 * 180.36746 * 15 13 12 17 17 O 1.43240 * 107.59167 * 21.36209 * 13 12 11 18 18 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 19 19 H 1.09000 * 111.11930 * 273.27460 * 11 9 7 20 20 H 1.08988 * 111.13000 * 37.44055 * 11 9 7 21 21 H 1.09000 * 110.84430 * 207.67396 * 12 11 9 22 22 H 1.09001 * 110.85014 * 84.05576 * 12 11 9 23 23 H 1.09007 * 109.46719 * 300.36856 * 15 13 12 24 24 H 1.09005 * 109.46985 * 60.36344 * 15 13 12 25 25 H 1.00903 * 111.00097 * 56.04582 * 16 15 13 26 26 H 1.00898 * 111.00916 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6284 -2.5758 -0.8908 11 6 2.2391 -3.6905 0.0731 12 6 1.3336 -4.7868 0.6978 13 6 0.4291 -3.9658 1.6418 14 1 0.8146 -4.0165 2.6600 15 6 -0.9995 -4.5122 1.6001 16 7 -1.8534 -3.7192 2.4944 17 8 0.4438 -2.6087 1.1837 18 1 -0.4850 -0.8401 0.0004 19 1 2.5781 -3.9807 -0.9214 20 1 3.0837 -3.4614 0.7227 21 1 1.9281 -5.5072 1.2596 22 1 0.7419 -5.2853 -0.0700 23 1 -1.3828 -4.4494 0.5816 24 1 -1.0002 -5.5526 1.9251 25 1 -1.8187 -2.7400 2.2532 26 1 -2.8029 -4.0602 2.4842 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259827442.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:04 Heat of formation + Delta-G solvation = -63.807221 kcal Electronic energy + Delta-G solvation = -10310.547886 eV Core-core repulsion = 8388.362266 eV Total energy + Delta-G solvation = -1922.185619 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.47373 -34.04949 -32.43106 -31.09050 -28.45308 -25.03058 -22.67891 -20.65065 -19.96572 -17.05021 -16.06634 -15.11557 -14.42081 -13.95832 -13.71269 -13.37242 -12.84242 -12.16226 -11.74761 -11.29900 -10.75998 -10.71375 -10.46913 -10.28673 -10.10152 -9.88022 -8.86987 -8.46710 -8.29993 -7.92468 -6.34530 -4.11660 3.45389 3.50183 3.63060 4.54413 4.80604 5.11753 5.39133 5.46840 5.54135 5.76916 5.85678 5.92193 6.18995 6.27550 6.45240 6.50640 6.68390 6.78963 7.34922 7.55471 7.89691 8.11013 8.35065 8.60951 8.90503 9.71271 11.07215 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.060551 B = 0.015416 C = 0.012955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.308103 B = 1815.802987 C = 2160.854606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.031 3.969 3 Si 1.075 2.925 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.609 4.609 8 H 0.056 0.944 9 C 0.191 3.809 10 H 0.016 0.984 11 C -0.139 4.139 12 C -0.153 4.153 13 C 0.076 3.924 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.849 5.849 17 O -0.372 6.372 18 H 0.278 0.722 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.355 0.645 26 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -7.042 0.900 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.177 4.177 3 Si 0.903 3.097 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.646 4.646 8 H 0.074 0.926 9 C 0.136 3.864 10 H 0.034 0.966 11 C -0.176 4.176 12 C -0.191 4.191 13 C 0.017 3.983 14 H 0.085 0.915 15 C -0.075 4.075 16 N -0.378 5.378 17 O -0.292 6.292 18 H 0.090 0.910 19 H 0.080 0.920 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.170 0.830 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.342 -5.498 1.565 5.726 hybrid contribution -0.249 -1.778 -0.948 2.030 sum 0.094 -7.276 0.616 7.302 Atomic orbital electron populations 1.70621 1.06928 1.31604 1.43623 1.25868 0.96587 1.02697 0.92551 0.83479 0.74469 0.74760 0.76959 1.21519 1.21328 1.21204 1.22055 0.93951 0.91051 1.57564 0.92603 1.20706 0.87258 0.94051 0.84366 0.96602 1.23187 0.99131 0.95521 0.99799 1.23114 0.98456 0.98499 0.99012 1.22562 0.92657 0.85504 0.97593 0.91513 1.22171 0.94654 0.96732 0.93991 1.58711 1.13025 1.08772 1.57324 1.88731 1.72080 1.22359 1.46064 0.91028 0.91994 0.91392 0.91559 0.91804 0.95914 0.91676 0.83049 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.65 13.56 55.43 0.75 -26.90 15 2 C 0.03 0.91 5.42 -17.82 -0.10 0.81 15 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 15 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.61 -17.71 8.81 -34.44 -0.30 -18.02 15 8 H 0.06 1.60 7.77 -52.48 -0.41 1.19 15 9 C 0.19 5.02 2.83 -26.85 -0.08 4.95 15 10 H 0.02 0.45 8.04 -51.93 -0.42 0.04 15 11 C -0.14 -2.96 6.53 -24.48 -0.16 -3.12 15 12 C -0.15 -2.77 6.55 -24.78 -0.16 -2.93 15 13 C 0.08 1.56 3.79 -26.01 -0.10 1.46 15 14 H 0.07 1.39 8.14 -51.93 -0.42 0.96 15 15 C 0.06 0.99 6.39 -3.83 -0.02 0.97 15 16 N -0.85 -14.91 9.62 -10.37 -0.10 -15.01 15 17 O -0.37 -9.64 8.95 -35.23 -0.32 -9.95 15 18 H 0.28 8.67 6.57 -40.82 -0.27 8.41 15 19 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 20 H 0.07 1.47 8.05 -51.94 -0.42 1.05 15 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.06 1.07 7.85 -51.93 -0.41 0.66 15 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 24 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 25 H 0.36 7.03 8.45 -39.29 -0.33 6.70 15 26 H 0.33 4.74 9.08 -39.29 -0.36 4.39 15 LS Contribution 220.17 15.07 3.32 3.32 Total: -1.00 -31.32 220.17 -5.87 -37.19 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.52 Total: 6.61 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -0.92 Total: -15.88 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.65 Total: -41.91 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.32 Total: -9.95 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -31.32 -5.87 -37.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827442.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.617 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds