Wall clock time and date at job start Mon Mar 30 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.27592 * 60.64100 * 9 7 2 11 11 C 1.54950 * 110.30459 * 182.83620 * 9 7 2 12 12 C 1.55310 * 100.93879 * 155.36075 * 11 9 7 13 13 C 1.54377 * 102.25088 * 325.86073 * 12 11 9 14 14 H 1.08991 * 109.83366 * 261.84294 * 13 12 11 15 15 C 1.53005 * 109.90550 * 140.91502 * 13 12 11 16 16 N 1.46889 * 109.47505 * 180.36746 * 15 13 12 17 17 O 1.43240 * 107.59167 * 21.36209 * 13 12 11 18 18 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 19 19 H 1.09000 * 111.11930 * 273.27460 * 11 9 7 20 20 H 1.08988 * 111.13000 * 37.44055 * 11 9 7 21 21 H 1.09000 * 110.84430 * 207.67396 * 12 11 9 22 22 H 1.09001 * 110.85014 * 84.05576 * 12 11 9 23 23 H 1.09007 * 109.46719 * 300.36856 * 15 13 12 24 24 H 1.09005 * 109.46985 * 60.36344 * 15 13 12 25 25 H 1.00903 * 111.00097 * 56.04582 * 16 15 13 26 26 H 1.00898 * 111.00916 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6284 -2.5758 -0.8908 11 6 2.2391 -3.6905 0.0731 12 6 1.3336 -4.7868 0.6978 13 6 0.4291 -3.9658 1.6418 14 1 0.8146 -4.0165 2.6600 15 6 -0.9995 -4.5122 1.6001 16 7 -1.8534 -3.7192 2.4944 17 8 0.4438 -2.6087 1.1837 18 1 -0.4850 -0.8401 0.0004 19 1 2.5781 -3.9807 -0.9214 20 1 3.0837 -3.4614 0.7227 21 1 1.9281 -5.5072 1.2596 22 1 0.7419 -5.2853 -0.0700 23 1 -1.3828 -4.4494 0.5816 24 1 -1.0002 -5.5526 1.9251 25 1 -1.8187 -2.7400 2.2532 26 1 -2.8029 -4.0602 2.4842 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827442.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:04 Heat of formation + Delta-G solvation = -87.554347 kcal Electronic energy + Delta-G solvation = -10311.577638 eV Core-core repulsion = 8388.362266 eV Total energy + Delta-G solvation = -1923.215372 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.24974 -35.72347 -34.42506 -32.83805 -30.24734 -26.94645 -24.48977 -22.38837 -21.64961 -19.15379 -17.71569 -16.75106 -16.08729 -15.63822 -15.50307 -15.36918 -14.47215 -13.87580 -13.46139 -13.07085 -12.63777 -12.44931 -12.22269 -11.91843 -11.90498 -11.58831 -10.83042 -10.65172 -10.02489 -9.63136 -8.65485 -6.43500 1.52283 1.62469 1.78515 2.56131 3.02219 3.40195 3.70062 3.80199 4.02669 4.18482 4.33952 4.39054 4.63681 4.68100 4.83933 4.87851 5.04438 5.18010 5.44004 5.95376 6.08350 6.12743 6.53436 6.55423 6.74331 7.49677 8.75682 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.060551 B = 0.015416 C = 0.012955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.308103 B = 1815.802987 C = 2160.854606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.123 2.877 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.629 4.629 8 H 0.054 0.946 9 C 0.181 3.819 10 H -0.011 1.011 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.062 3.938 14 H 0.064 0.936 15 C 0.061 3.939 16 N -0.852 5.852 17 O -0.402 6.402 18 H 0.264 0.736 19 H 0.078 0.922 20 H 0.062 0.938 21 H 0.101 0.899 22 H 0.081 0.919 23 H 0.016 0.984 24 H 0.099 0.901 25 H 0.340 0.660 26 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -8.049 1.164 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.224 4.224 3 Si 0.944 3.056 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.207 1.207 7 C -0.666 4.666 8 H 0.072 0.928 9 C 0.126 3.874 10 H 0.006 0.994 11 C -0.172 4.172 12 C -0.175 4.175 13 C 0.003 3.997 14 H 0.082 0.918 15 C -0.070 4.070 16 N -0.382 5.382 17 O -0.323 6.323 18 H 0.074 0.926 19 H 0.097 0.903 20 H 0.081 0.919 21 H 0.119 0.881 22 H 0.100 0.900 23 H 0.034 0.966 24 H 0.118 0.882 25 H 0.152 0.848 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.019 -6.550 1.833 6.877 hybrid contribution -0.482 -1.546 -0.998 1.902 sum 0.536 -8.096 0.835 8.156 Atomic orbital electron populations 1.70750 1.07900 1.30732 1.46070 1.27418 0.96705 1.06731 0.91545 0.82879 0.74256 0.70940 0.77492 1.19480 1.20048 1.20721 1.22486 0.94224 0.92799 1.57117 0.92791 1.20618 0.87908 0.95182 0.83712 0.99389 1.23091 0.98318 0.94675 1.01086 1.23078 0.97672 0.97737 0.98966 1.22891 0.95189 0.83807 0.97803 0.91844 1.22154 0.92795 0.98162 0.93893 1.58722 1.14513 1.07837 1.57134 1.88644 1.72125 1.25914 1.45596 0.92594 0.90324 0.91890 0.88053 0.89995 0.96572 0.88241 0.84801 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.16 13.56 21.45 0.29 -57.87 15 2 C -0.02 -1.35 5.42 84.65 0.46 -0.89 15 3 Si 1.12 51.61 29.90 68.60 2.05 53.66 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 7 C -0.63 -37.02 8.81 25.60 0.23 -36.79 15 8 H 0.05 3.10 7.77 -2.91 -0.02 3.08 15 9 C 0.18 9.63 2.83 30.52 0.09 9.72 15 10 H -0.01 -0.65 8.04 -2.39 -0.02 -0.67 15 11 C -0.13 -5.53 6.53 32.05 0.21 -5.32 15 12 C -0.14 -4.55 6.55 31.86 0.21 -4.34 15 13 C 0.06 2.44 3.79 31.06 0.12 2.56 15 14 H 0.06 2.54 8.14 -2.39 -0.02 2.52 15 15 C 0.06 2.04 6.39 86.31 0.55 2.60 15 16 N -0.85 -29.00 9.62 -186.72 -1.80 -30.80 15 17 O -0.40 -21.05 8.95 -148.98 -1.33 -22.38 15 18 H 0.26 17.06 6.57 -92.71 -0.61 16.45 15 19 H 0.08 2.93 8.14 -2.39 -0.02 2.91 15 20 H 0.06 2.63 8.05 -2.39 -0.02 2.61 15 21 H 0.10 2.70 8.14 -2.39 -0.02 2.68 15 22 H 0.08 2.45 7.85 -2.39 -0.02 2.43 15 23 H 0.02 0.56 8.14 -2.38 -0.02 0.54 15 24 H 0.10 2.67 8.14 -2.38 -0.02 2.65 15 25 H 0.34 13.56 8.45 -89.69 -0.76 12.80 15 26 H 0.35 9.46 9.08 -89.70 -0.81 8.65 15 Total: -1.00 -68.02 220.17 0.83 -67.18 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.24 Total: 22.68 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 1.86 Total: -32.48 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -1.51 Total: -88.67 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -1.33 Total: -22.38 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -68.02 0.83 -67.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827442.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.370 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds