Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09003 * 110.33161 * 59.01828 * 9 7 2 11 11 C 1.54475 * 110.36951 * 181.27031 * 9 7 2 12 12 C 1.54688 * 103.97604 * 142.73782 * 11 9 7 13 13 C 1.54477 * 104.08045 * 0.13427 * 12 11 9 14 14 H 1.08998 * 110.37120 * 94.76175 * 13 12 11 15 15 C 1.52997 * 110.46505 * 217.05237 * 13 12 11 16 16 N 1.46900 * 109.47244 * 181.88662 * 15 13 12 17 17 O 1.44423 * 110.36823 * 296.76939 * 9 7 2 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09005 * 110.50939 * 261.45001 * 11 9 7 20 20 H 1.08997 * 110.51469 * 24.16150 * 11 9 7 21 21 H 1.09004 * 110.57677 * 241.44249 * 12 11 9 22 22 H 1.09001 * 110.54213 * 118.80570 * 12 11 9 23 23 H 1.09005 * 109.47505 * 301.89074 * 15 13 12 24 24 H 1.09001 * 109.47502 * 61.88943 * 15 13 12 25 25 H 1.00895 * 111.00304 * 179.97438 * 16 15 13 26 26 H 1.00898 * 111.00255 * 303.95504 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6097 -2.5623 -0.8845 11 6 2.2357 -3.6889 0.0286 12 6 1.5325 -4.7304 0.9306 13 6 0.2062 -4.0467 1.3305 14 1 -0.5949 -4.3491 0.6562 15 6 -0.1579 -4.3900 2.7763 16 7 -1.4431 -3.7665 3.1189 17 8 0.4663 -2.6320 1.1998 18 1 -0.4850 0.8401 -0.0004 19 1 2.3860 -4.0890 -0.9742 20 1 3.1867 -3.3852 0.4661 21 1 2.1352 -4.9411 1.8141 22 1 1.3371 -5.6476 0.3751 23 1 -0.2386 -5.4717 2.8837 24 1 0.6172 -4.0154 3.4450 25 1 -1.7061 -3.9789 4.0696 26 1 -1.4138 -2.7697 2.9657 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259827443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = -57.359565 kcal Electronic energy + Delta-G solvation = -10229.886480 eV Core-core repulsion = 8307.980452 eV Total energy + Delta-G solvation = -1921.906028 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.15685 -33.95610 -32.35043 -30.81005 -28.58959 -25.37359 -22.61800 -20.38567 -19.79927 -16.69074 -15.42566 -15.23003 -14.45474 -14.21426 -13.80252 -13.22587 -12.44239 -12.18676 -11.62876 -11.40862 -10.89799 -10.63366 -10.41966 -10.14723 -9.98970 -9.59602 -9.06758 -8.57686 -8.22943 -8.02439 -5.99536 -4.12490 3.32809 3.37203 3.39567 4.42926 4.98715 5.10482 5.47977 5.56529 5.72169 5.90040 5.94664 6.02699 6.38923 6.50746 6.63843 6.73096 6.86517 6.89886 7.53989 7.61313 7.90007 7.94911 8.25537 8.57350 8.99233 9.57658 11.08106 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.058099 B = 0.015070 C = 0.012865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.823842 B = 1857.542638 C = 2175.845608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.207 3.793 10 H 0.025 0.975 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.064 3.936 14 H 0.055 0.945 15 C 0.074 3.926 16 N -0.851 5.851 17 O -0.351 6.351 18 H 0.261 0.739 19 H 0.054 0.946 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.027 0.973 25 H 0.329 0.671 26 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -6.179 3.270 7.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.151 3.849 10 H 0.043 0.957 11 C -0.184 4.184 12 C -0.188 4.188 13 C 0.004 3.996 14 H 0.073 0.927 15 C -0.057 4.057 16 N -0.380 5.380 17 O -0.270 6.270 18 H 0.071 0.929 19 H 0.072 0.928 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.046 0.954 25 H 0.140 0.860 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.554 -6.344 2.819 6.964 hybrid contribution 1.078 1.180 0.618 1.714 sum 1.632 -5.164 3.437 6.415 Atomic orbital electron populations 1.70038 1.05981 1.26656 1.47243 1.25098 0.94821 0.99293 0.93781 0.86669 0.79684 0.82971 0.78677 1.20089 1.21152 1.20145 1.21014 0.92593 0.89886 1.53402 0.91957 1.20482 0.87224 0.92344 0.84827 0.95728 1.23060 1.00681 0.96824 0.97881 1.22951 0.97647 0.98498 0.99665 1.22808 0.95127 0.86881 0.94781 0.92674 1.21784 0.90029 0.98019 0.95856 1.58715 1.31831 1.18736 1.28760 1.89435 1.73566 1.17720 1.46310 0.92874 0.92752 0.91882 0.92160 0.92329 0.91508 0.95448 0.86035 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.99 13.00 55.43 0.72 -25.27 15 2 C 0.08 2.19 5.43 -17.82 -0.10 2.09 15 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.53 -15.27 8.77 -34.44 -0.30 -15.58 15 8 H 0.06 1.73 7.58 -52.49 -0.40 1.33 15 9 C 0.21 5.52 3.08 -27.11 -0.08 5.43 15 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 11 C -0.15 -3.17 6.63 -25.07 -0.17 -3.33 15 12 C -0.15 -2.79 6.64 -25.07 -0.17 -2.96 15 13 C 0.06 1.34 3.52 -25.96 -0.09 1.24 15 14 H 0.06 1.20 8.14 -51.93 -0.42 0.77 15 15 C 0.07 1.32 6.43 -3.83 -0.02 1.29 15 16 N -0.85 -14.81 9.62 -10.37 -0.10 -14.91 15 17 O -0.35 -9.29 10.28 -35.23 -0.36 -9.65 15 18 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 19 H 0.05 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.06 1.36 7.71 -51.93 -0.40 0.96 15 21 H 0.06 1.04 7.88 -51.93 -0.41 0.63 15 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 25 H 0.33 4.62 9.08 -39.29 -0.36 4.26 15 26 H 0.36 6.93 8.65 -39.29 -0.34 6.59 15 LS Contribution 222.32 15.07 3.35 3.35 Total: -1.00 -30.75 222.32 -5.92 -36.66 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.57 Total: 5.03 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.93 Total: -11.81 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.62 Total: -40.18 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.36 Total: -9.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -30.75 -5.92 -36.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.696 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds