Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09003 * 110.33161 * 59.01828 * 9 7 2 11 11 C 1.54475 * 110.36951 * 181.27031 * 9 7 2 12 12 C 1.54688 * 103.97604 * 142.73782 * 11 9 7 13 13 C 1.54477 * 104.08045 * 0.13427 * 12 11 9 14 14 H 1.08998 * 110.37120 * 94.76175 * 13 12 11 15 15 C 1.52997 * 110.46505 * 217.05237 * 13 12 11 16 16 N 1.46900 * 109.47244 * 181.88662 * 15 13 12 17 17 O 1.44423 * 110.36823 * 296.76939 * 9 7 2 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09005 * 110.50939 * 261.45001 * 11 9 7 20 20 H 1.08997 * 110.51469 * 24.16150 * 11 9 7 21 21 H 1.09004 * 110.57677 * 241.44249 * 12 11 9 22 22 H 1.09001 * 110.54213 * 118.80570 * 12 11 9 23 23 H 1.09005 * 109.47505 * 301.89074 * 15 13 12 24 24 H 1.09001 * 109.47502 * 61.88943 * 15 13 12 25 25 H 1.00895 * 111.00304 * 179.97438 * 16 15 13 26 26 H 1.00898 * 111.00255 * 303.95504 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6097 -2.5623 -0.8845 11 6 2.2357 -3.6889 0.0286 12 6 1.5325 -4.7304 0.9306 13 6 0.2062 -4.0467 1.3305 14 1 -0.5949 -4.3491 0.6562 15 6 -0.1579 -4.3900 2.7763 16 7 -1.4431 -3.7665 3.1189 17 8 0.4663 -2.6320 1.1998 18 1 -0.4850 0.8401 -0.0004 19 1 2.3860 -4.0890 -0.9742 20 1 3.1867 -3.3852 0.4661 21 1 2.1352 -4.9411 1.8141 22 1 1.3371 -5.6476 0.3751 23 1 -0.2386 -5.4717 2.8837 24 1 0.6172 -4.0154 3.4450 25 1 -1.7061 -3.9789 4.0696 26 1 -1.4138 -2.7697 2.9657 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = -80.881997 kcal Electronic energy + Delta-G solvation = -10230.906489 eV Core-core repulsion = 8307.980452 eV Total energy + Delta-G solvation = -1922.926037 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.94870 -35.57113 -34.37888 -32.58341 -30.41631 -27.26622 -24.35729 -22.17394 -21.48282 -18.78693 -17.11372 -16.83150 -16.34483 -16.05830 -15.43916 -14.88071 -14.19588 -13.99777 -13.41784 -13.03968 -12.79871 -12.43613 -12.19178 -11.91126 -11.77837 -11.33819 -11.02789 -10.71465 -10.04277 -9.60256 -8.16459 -6.37800 1.40017 1.43242 1.51081 2.39924 3.04323 3.57126 3.73736 4.00863 4.17866 4.28042 4.44743 4.53017 4.80448 4.90862 4.94920 5.03452 5.17459 5.31872 5.51097 5.72546 6.14280 6.19607 6.54113 6.63516 6.91771 7.37510 8.91728 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.058099 B = 0.015070 C = 0.012865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.823842 B = 1857.542638 C = 2175.845608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.020 3.980 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.196 3.804 10 H -0.013 1.013 11 C -0.141 4.141 12 C -0.136 4.136 13 C 0.052 3.948 14 H 0.042 0.958 15 C 0.079 3.921 16 N -0.856 5.856 17 O -0.383 6.383 18 H 0.262 0.738 19 H 0.070 0.930 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.101 0.899 24 H 0.026 0.974 25 H 0.349 0.651 26 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 -6.932 3.944 8.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.593 4.593 8 H 0.084 0.916 9 C 0.140 3.860 10 H 0.005 0.995 11 C -0.179 4.179 12 C -0.175 4.175 13 C -0.007 4.007 14 H 0.060 0.940 15 C -0.051 4.051 16 N -0.386 5.386 17 O -0.303 6.303 18 H 0.071 0.929 19 H 0.089 0.911 20 H 0.081 0.919 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.119 0.881 24 H 0.044 0.956 25 H 0.162 0.838 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.567 -7.128 3.506 8.097 hybrid contribution 0.710 1.346 0.404 1.574 sum 2.277 -5.783 3.910 7.342 Atomic orbital electron populations 1.70185 1.07722 1.27578 1.48440 1.26021 0.95710 1.03268 0.93222 0.85527 0.78348 0.78049 0.79162 1.18801 1.20700 1.19477 1.21462 0.93085 0.91373 1.53405 0.91595 1.20401 0.87741 0.93998 0.83842 0.99516 1.22951 0.99446 0.95737 0.99736 1.22908 0.95886 0.98439 1.00226 1.23103 0.96172 0.84539 0.96883 0.94022 1.21797 0.89995 0.99913 0.93439 1.58708 1.31832 1.17610 1.30460 1.89350 1.73884 1.21415 1.45656 0.92882 0.91108 0.91934 0.90043 0.89167 0.88077 0.95572 0.83818 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.65 13.00 21.45 0.28 -55.37 15 2 C 0.02 1.15 5.43 84.66 0.46 1.61 15 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 15 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.56 -32.34 8.77 25.60 0.22 -32.12 15 8 H 0.07 3.66 7.58 -2.91 -0.02 3.64 15 9 C 0.20 10.65 3.08 30.35 0.09 10.74 15 10 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 15 11 C -0.14 -5.91 6.63 31.67 0.21 -5.70 15 12 C -0.14 -4.73 6.64 31.67 0.21 -4.52 15 13 C 0.05 2.13 3.52 31.10 0.11 2.24 15 14 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15 15 C 0.08 2.65 6.43 86.30 0.55 3.20 15 16 N -0.86 -28.76 9.62 -186.71 -1.80 -30.56 15 17 O -0.38 -20.57 10.28 -148.98 -1.53 -22.10 15 18 H 0.26 15.24 8.31 -92.70 -0.77 14.47 15 19 H 0.07 2.68 8.14 -2.38 -0.02 2.66 15 20 H 0.06 2.60 7.71 -2.39 -0.02 2.58 15 21 H 0.08 2.50 7.88 -2.39 -0.02 2.48 15 22 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.10 2.69 8.14 -2.38 -0.02 2.68 15 24 H 0.03 0.88 8.14 -2.39 -0.02 0.86 15 25 H 0.35 9.15 9.08 -89.70 -0.81 8.34 15 26 H 0.34 13.33 8.65 -89.70 -0.78 12.56 15 Total: -1.00 -66.80 222.32 0.42 -66.38 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.42 Total: 19.57 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 1.86 Total: -24.55 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.52 Total: -85.93 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.53 Total: -22.10 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.80 0.42 -66.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.507 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds