Wall clock time and date at job start Mon Mar 30 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47228 * 269.99758 * 3 2 1 5 5 H 1.48498 * 109.46872 * 30.00126 * 3 2 1 6 6 H 1.48507 * 109.47214 * 149.99732 * 3 2 1 7 7 C 1.38641 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99993 * 359.97438 * 7 2 1 9 9 O 1.34929 * 119.99763 * 180.02562 * 7 2 1 10 10 C 1.42907 * 116.99416 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46456 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47087 * 65.00361 * 11 10 9 13 13 C 1.46906 * 110.99927 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.49903 * 223.62356 * 13 12 11 15 15 C 1.52991 * 117.49945 * 154.99892 * 13 12 11 16 16 H 0.96992 * 119.99866 * 0.02562 * 1 2 3 17 17 H 1.08998 * 109.47072 * 60.00439 * 10 9 7 18 18 H 1.08993 * 109.46884 * 299.99488 * 10 9 7 19 19 H 1.08994 * 109.47524 * 304.99866 * 11 10 9 20 20 H 1.09008 * 109.46436 * 184.99714 * 11 10 9 21 21 H 1.00895 * 111.00373 * 56.04357 * 12 11 10 22 22 H 1.08998 * 115.54830 * 9.32348 * 13 12 11 23 23 H 1.09004 * 117.49768 * 359.97438 * 14 13 12 24 24 H 1.08997 * 117.50254 * 145.01687 * 14 13 12 25 25 H 1.08999 * 117.50124 * 214.97807 * 15 13 12 26 26 H 1.08998 * 117.49944 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5474 1.4403 0.7001 7 6 2.0091 -1.2006 0.0005 8 1 1.4692 -2.1359 0.0014 9 8 3.3584 -1.2005 0.0011 10 6 4.0071 -2.4738 0.0010 11 6 5.5239 -2.2732 0.0010 12 7 5.9326 -1.6288 1.2563 13 6 7.3864 -1.4204 1.2921 14 6 8.1159 -1.7534 2.5950 15 6 7.9169 -0.2939 2.1811 16 1 -0.4849 0.8400 -0.0004 17 1 3.7146 -3.0306 -0.8892 18 1 3.7140 -3.0309 0.8908 19 1 5.8069 -1.6412 -0.8407 20 1 6.0183 -3.2406 -0.0885 21 1 5.6246 -2.1638 2.0544 22 1 7.9121 -1.6136 0.3570 23 1 7.5172 -2.1267 3.4259 24 1 9.1219 -2.1658 2.5174 25 1 8.7919 0.2538 1.8311 26 1 7.1872 0.2928 2.7391 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259897257.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:04 Heat of formation + Delta-G solvation = -8.138075 kcal Electronic energy + Delta-G solvation = -9739.842644 eV Core-core repulsion = 7820.071020 eV Total energy + Delta-G solvation = -1919.771624 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.83889 -36.36517 -33.27278 -31.60438 -27.66708 -23.98476 -22.28426 -21.30381 -21.03712 -17.49403 -16.01888 -15.79194 -14.90406 -14.07811 -13.86881 -13.38707 -12.80412 -12.38539 -11.86915 -11.67520 -11.43320 -10.86049 -10.73144 -10.61188 -10.19992 -9.80253 -9.50050 -9.16154 -8.06031 -7.88186 -5.90074 -3.56514 3.52698 3.54996 3.79248 3.93511 4.28554 4.69487 4.99643 5.05616 5.12767 5.33150 5.42519 5.65725 5.67844 5.77028 5.93316 6.03098 6.24603 6.29629 6.44319 6.59332 7.35773 7.66197 8.00399 8.46182 9.51074 10.09005 11.22829 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.058867 B = 0.011817 C = 0.010368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.531525 B = 2368.927663 C = 2699.931793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.043 3.957 3 Si 0.905 3.095 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.357 4.357 8 H 0.075 0.925 9 O -0.318 6.318 10 C 0.084 3.916 11 C 0.066 3.934 12 N -0.646 5.646 13 C 0.027 3.973 14 C -0.212 4.212 15 C -0.175 4.175 16 H 0.268 0.732 17 H 0.034 0.966 18 H 0.027 0.973 19 H 0.077 0.923 20 H 0.035 0.965 21 H 0.342 0.658 22 H 0.105 0.895 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.481 -3.411 2.630 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.154 4.154 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.181 1.181 7 C -0.435 4.435 8 H 0.093 0.907 9 O -0.234 6.234 10 C 0.006 3.994 11 C -0.063 4.063 12 N -0.276 5.276 13 C -0.084 4.084 14 C -0.251 4.251 15 C -0.213 4.213 16 H 0.077 0.923 17 H 0.052 0.948 18 H 0.045 0.955 19 H 0.095 0.905 20 H 0.053 0.947 21 H 0.161 0.839 22 H 0.123 0.877 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.310 -2.516 2.392 14.725 hybrid contribution 0.461 -0.363 0.172 0.612 sum 14.772 -2.879 2.564 15.266 Atomic orbital electron populations 1.69698 1.05432 1.27105 1.54141 1.24298 0.94811 0.98315 0.97953 0.86148 0.80480 0.81983 0.78073 1.21054 1.22066 1.18051 1.20405 0.78935 0.94922 1.49217 0.90711 1.85334 1.19846 1.24403 1.93815 1.22038 0.90334 0.88396 0.98592 1.22064 0.95490 0.96285 0.92490 1.60076 1.08879 1.53828 1.04812 1.22437 0.88697 1.03220 0.94071 1.23418 1.01943 0.99948 0.99823 1.23098 1.02672 0.91311 1.04222 0.92280 0.94762 0.95473 0.90451 0.94689 0.83855 0.87673 0.88864 0.89201 0.89091 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.35 13.96 55.48 0.77 -28.57 15 2 C 0.04 1.32 5.49 -17.51 -0.10 1.23 15 3 Si 0.91 24.27 28.62 -169.99 -4.86 19.41 15 4 H -0.28 -7.48 7.11 56.52 0.40 -7.08 15 5 H -0.29 -7.66 7.11 56.52 0.40 -7.26 15 6 H -0.26 -6.96 7.11 56.52 0.40 -6.56 15 7 C -0.36 -10.88 10.35 30.88 0.32 -10.56 15 8 H 0.08 2.36 8.00 -52.49 -0.42 1.94 15 9 O -0.32 -8.68 8.55 -16.51 -0.14 -8.82 15 10 C 0.08 1.78 6.29 37.16 0.23 2.01 15 11 C 0.07 1.11 5.92 -3.82 -0.02 1.09 15 12 N -0.65 -10.99 6.73 -106.72 -0.72 -11.71 15 13 C 0.03 0.37 6.31 -67.71 -0.43 -0.06 15 14 C -0.21 -2.44 10.23 -26.73 -0.27 -2.71 15 15 C -0.17 -2.26 10.46 -26.74 -0.28 -2.54 15 16 H 0.27 8.00 8.31 -40.82 -0.34 7.67 15 17 H 0.03 0.70 8.14 -51.93 -0.42 0.27 15 18 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 19 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 20 H 0.04 0.49 8.14 -51.92 -0.42 0.06 15 21 H 0.34 5.44 8.52 -39.29 -0.33 5.11 15 22 H 0.11 1.33 7.90 -51.93 -0.41 0.92 15 23 H 0.09 1.05 8.09 -51.93 -0.42 0.63 15 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.10 1.41 8.14 -51.93 -0.42 0.99 15 LS Contribution 232.05 15.07 3.50 3.50 Total: -1.00 -33.26 232.05 -5.68 -38.94 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.68 Total: -1.21 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.55 Total: -11.53 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.06 Total: -40.28 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.14 Total: -8.82 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.86 Total: 19.41 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.26 -5.68 -38.94 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897257.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.800 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds