Wall clock time and date at job start Mon Mar 30 2020 02:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 119.99859 * 2 1 4 4 H 1.48497 * 109.47228 * 269.99758 * 3 2 1 5 5 H 1.48498 * 109.46872 * 30.00126 * 3 2 1 6 6 H 1.48507 * 109.47214 * 149.99732 * 3 2 1 7 7 C 1.38641 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99993 * 359.97438 * 7 2 1 9 9 O 1.34929 * 119.99763 * 180.02562 * 7 2 1 10 10 C 1.42907 * 116.99416 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46456 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47087 * 65.00361 * 11 10 9 13 13 C 1.46906 * 110.99927 * 179.97438 * 12 11 10 14 14 C 1.52998 * 117.49903 * 223.62356 * 13 12 11 15 15 C 1.52991 * 117.49945 * 154.99892 * 13 12 11 16 16 H 0.96992 * 119.99866 * 0.02562 * 1 2 3 17 17 H 1.08998 * 109.47072 * 60.00439 * 10 9 7 18 18 H 1.08993 * 109.46884 * 299.99488 * 10 9 7 19 19 H 1.08994 * 109.47524 * 304.99866 * 11 10 9 20 20 H 1.09008 * 109.46436 * 184.99714 * 11 10 9 21 21 H 1.00895 * 111.00373 * 56.04357 * 12 11 10 22 22 H 1.08998 * 115.54830 * 9.32348 * 13 12 11 23 23 H 1.09004 * 117.49768 * 359.97438 * 14 13 12 24 24 H 1.08997 * 117.50254 * 145.01687 * 14 13 12 25 25 H 1.08999 * 117.50124 * 214.97807 * 15 13 12 26 26 H 1.08998 * 117.49944 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5474 1.4403 0.7001 7 6 2.0091 -1.2006 0.0005 8 1 1.4692 -2.1359 0.0014 9 8 3.3584 -1.2005 0.0011 10 6 4.0071 -2.4738 0.0010 11 6 5.5239 -2.2732 0.0010 12 7 5.9326 -1.6288 1.2563 13 6 7.3864 -1.4204 1.2921 14 6 8.1159 -1.7534 2.5950 15 6 7.9169 -0.2939 2.1811 16 1 -0.4849 0.8400 -0.0004 17 1 3.7146 -3.0306 -0.8892 18 1 3.7140 -3.0309 0.8908 19 1 5.8069 -1.6412 -0.8407 20 1 6.0183 -3.2406 -0.0885 21 1 5.6246 -2.1638 2.0544 22 1 7.9121 -1.6136 0.3570 23 1 7.5172 -2.1267 3.4259 24 1 9.1219 -2.1658 2.5174 25 1 8.7919 0.2538 1.8311 26 1 7.1872 0.2928 2.7391 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259897257.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:04 Heat of formation + Delta-G solvation = -32.729495 kcal Electronic energy + Delta-G solvation = -9740.909008 eV Core-core repulsion = 7820.071020 eV Total energy + Delta-G solvation = -1920.837988 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.11330 -38.14863 -34.77889 -33.77888 -29.25811 -26.18211 -23.22182 -22.85141 -22.11032 -19.76995 -17.73527 -17.11816 -16.41577 -15.63635 -15.59341 -15.13434 -14.49805 -13.83556 -13.76258 -13.32738 -12.80517 -12.50203 -12.34369 -11.86436 -11.72568 -11.53068 -11.40672 -11.13184 -10.33413 -9.05526 -8.25700 -5.94286 1.39641 1.43046 1.67003 2.48048 2.93036 3.06786 3.16932 3.45825 4.04991 4.11529 4.20671 4.36026 4.38423 4.60599 4.77947 4.80070 4.85645 5.05780 5.08471 5.30356 5.58813 6.14054 6.20930 6.46045 7.14712 7.88471 8.90457 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.058867 B = 0.011817 C = 0.010368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.531525 B = 2368.927663 C = 2699.931793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.014 4.014 3 Si 0.976 3.024 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.358 4.358 8 H 0.047 0.953 9 O -0.336 6.336 10 C 0.073 3.927 11 C 0.078 3.922 12 N -0.674 5.674 13 C 0.010 3.990 14 C -0.188 4.188 15 C -0.185 4.185 16 H 0.273 0.727 17 H 0.041 0.959 18 H 0.030 0.970 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.343 0.657 22 H 0.119 0.881 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.564 -3.165 2.709 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.207 4.207 3 Si 0.801 3.199 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.436 4.436 8 H 0.065 0.935 9 O -0.252 6.252 10 C -0.004 4.004 11 C -0.051 4.051 12 N -0.306 5.306 13 C -0.101 4.101 14 C -0.227 4.227 15 C -0.223 4.223 16 H 0.082 0.918 17 H 0.059 0.941 18 H 0.048 0.952 19 H 0.091 0.909 20 H 0.092 0.908 21 H 0.163 0.837 22 H 0.137 0.863 23 H 0.111 0.889 24 H 0.132 0.868 25 H 0.127 0.873 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.409 -2.288 2.470 16.751 hybrid contribution -0.159 -0.562 0.167 0.607 sum 16.250 -2.850 2.637 16.707 Atomic orbital electron populations 1.69799 1.06914 1.28351 1.55305 1.25168 0.95728 1.01933 0.97869 0.85088 0.78627 0.77767 0.78429 1.19998 1.20755 1.18757 1.20418 0.80513 0.94050 1.48642 0.93472 1.85275 1.17905 1.28036 1.93945 1.22433 0.92773 0.86281 0.98929 1.21940 0.92287 0.98277 0.92604 1.60024 1.11397 1.54391 1.04737 1.22543 0.87192 1.04548 0.95790 1.23453 1.02670 0.98442 0.98133 1.23157 1.02886 0.92061 1.04192 0.91786 0.94120 0.95218 0.90898 0.90832 0.83704 0.86285 0.88866 0.86762 0.87302 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.67 13.96 21.61 0.30 -61.37 15 2 C -0.01 -0.88 5.49 84.83 0.47 -0.42 15 3 Si 0.98 50.13 28.62 68.60 1.96 52.10 15 4 H -0.27 -13.54 7.11 99.48 0.71 -12.83 15 5 H -0.28 -13.76 7.11 99.48 0.71 -13.05 15 6 H -0.26 -13.68 7.11 99.48 0.71 -12.97 15 7 C -0.36 -22.09 10.35 67.92 0.70 -21.39 15 8 H 0.05 3.08 8.00 -2.91 -0.02 3.06 15 9 O -0.34 -18.21 8.55 -81.98 -0.70 -18.91 15 10 C 0.07 3.02 6.29 71.98 0.45 3.47 15 11 C 0.08 2.47 5.92 86.30 0.51 2.99 15 12 N -0.67 -21.79 6.73 -491.57 -3.31 -25.10 15 13 C 0.01 0.24 6.31 44.91 0.28 0.52 15 14 C -0.19 -3.75 10.23 30.59 0.31 -3.43 15 15 C -0.18 -4.38 10.46 30.59 0.32 -4.06 15 16 H 0.27 16.37 8.31 -92.71 -0.77 15.60 15 17 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 18 H 0.03 1.21 8.14 -2.39 -0.02 1.19 15 19 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 20 H 0.07 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.34 10.48 8.52 -89.70 -0.76 9.71 15 22 H 0.12 2.62 7.90 -2.39 -0.02 2.60 15 23 H 0.09 1.87 8.09 -2.39 -0.02 1.85 15 24 H 0.11 1.74 8.14 -2.39 -0.02 1.73 15 25 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 Total: -1.00 -70.38 232.05 1.69 -68.69 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.39 Total: 6.91 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 3.05 Total: -22.32 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -3.01 Total: -86.46 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.70 Total: -18.91 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.96 Total: 52.10 kcal Total: -70.38 1.69 -68.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897257.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.959 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds