Wall clock time and date at job start Mon Mar 30 2020 01:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99619 * 2 1 4 4 H 1.48498 * 109.46923 * 239.99603 * 3 2 1 5 5 H 1.48494 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00133 * 3 2 1 7 7 C 1.37877 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99710 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47703 * 300.00399 * 9 7 2 11 11 N 1.46906 * 109.46930 * 60.00353 * 9 7 2 12 12 C 1.52995 * 109.47109 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.47198 * 185.00234 * 12 9 7 14 14 C 1.47960 * 110.99873 * 170.00015 * 13 12 9 15 15 C 1.53937 * 86.17949 * 137.58413 * 14 13 12 16 16 C 1.47958 * 111.00220 * 269.36017 * 13 12 9 17 17 H 0.96994 * 120.00739 * 0.02562 * 1 2 3 18 18 H 1.00907 * 111.00013 * 59.99787 * 11 9 7 19 19 H 1.00903 * 111.00122 * 183.94984 * 11 9 7 20 20 H 1.09003 * 109.47012 * 65.00668 * 12 9 7 21 21 H 1.08999 * 109.47681 * 305.00270 * 12 9 7 22 22 H 1.09001 * 113.75911 * 23.26902 * 14 13 12 23 23 H 1.09004 * 113.76293 * 251.89925 * 14 13 12 24 24 H 1.09000 * 113.73632 * 90.63756 * 15 14 13 25 25 H 1.08998 * 113.73683 * 221.91814 * 15 14 13 26 26 H 1.09001 * 113.75711 * 108.10017 * 16 13 12 27 27 H 1.08998 * 113.76069 * 336.74148 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5564 0.8918 11 7 0.4062 -2.5778 -1.1975 12 6 2.2454 -3.6620 0.0015 13 7 1.5149 -4.9309 -0.1182 14 6 2.4438 -6.0565 -0.3614 15 6 1.5910 -6.8439 0.6497 16 6 1.1741 -5.4743 1.2151 17 1 -0.4851 0.8399 -0.0004 18 1 0.9639 -2.5269 -2.0368 19 1 -0.1577 -3.4145 -1.1882 20 1 2.8123 -3.6555 0.9325 21 1 2.9290 -3.5555 -0.8409 22 1 3.4623 -5.8665 -0.0228 23 1 2.3985 -6.4520 -1.3762 24 1 0.7707 -7.3985 0.1939 25 1 2.1776 -7.4452 1.3443 26 1 0.1142 -5.4044 1.4600 27 1 1.8211 -5.1138 2.0148 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259952999.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:18 Heat of formation + Delta-G solvation = 34.496184 kcal Electronic energy + Delta-G solvation = -9984.342496 eV Core-core repulsion = 8164.138294 eV Total energy + Delta-G solvation = -1820.204202 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.26956 -34.49159 -31.48197 -28.74536 -26.12107 -25.71649 -23.48244 -19.93037 -19.37701 -16.47485 -15.53885 -14.94100 -14.57373 -14.14801 -13.56277 -12.73940 -12.39520 -12.10698 -11.67331 -11.08463 -10.92774 -10.80026 -10.62077 -10.43187 -10.09244 -9.51392 -8.88308 -8.31755 -8.31170 -6.69478 -5.76616 -3.91971 3.39464 3.44352 3.46081 4.36767 4.57681 4.78891 5.13001 5.48993 5.62045 5.68111 5.85466 5.87546 5.95217 6.11683 6.23867 6.45194 6.75248 6.79075 6.99957 7.53256 7.73973 7.98926 8.37338 8.86816 9.27835 9.41814 9.76721 11.27945 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095865 B = 0.011430 C = 0.011017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.006861 B = 2449.194578 C = 2540.985398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.882 3.118 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.048 0.952 9 C 0.236 3.764 10 H 0.031 0.969 11 N -0.807 5.807 12 C -0.010 4.010 13 N -0.479 5.479 14 C -0.003 4.003 15 C -0.147 4.147 16 C 0.005 3.995 17 H 0.254 0.746 18 H 0.310 0.690 19 H 0.305 0.695 20 H 0.030 0.970 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 -9.815 0.944 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.122 4.122 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.067 0.933 9 C 0.126 3.874 10 H 0.049 0.951 11 N -0.332 5.332 12 C -0.140 4.140 13 N -0.201 5.201 14 C -0.132 4.132 15 C -0.185 4.185 16 C -0.124 4.124 17 H 0.064 0.936 18 H 0.121 0.879 19 H 0.115 0.885 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.098 0.902 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.391 -8.837 0.745 9.185 hybrid contribution 1.859 0.056 0.355 1.893 sum 4.250 -8.781 1.100 9.817 Atomic orbital electron populations 1.70104 1.05661 1.25512 1.46893 1.24929 0.94580 0.98401 0.94336 0.86873 0.79763 0.84038 0.78372 1.20434 1.21363 1.20522 1.20915 0.92040 0.90659 1.54511 0.93341 1.18832 0.88613 0.89180 0.90792 0.95095 1.59125 1.27953 1.42274 1.03840 1.23786 0.98593 0.92428 0.99209 1.68464 1.29641 1.01564 1.20451 1.23820 0.95649 0.93757 1.00022 1.23309 0.99977 0.96756 0.98450 1.23853 1.02191 0.93822 0.92573 0.93562 0.87928 0.88461 0.95141 0.92439 0.92071 0.90198 0.89621 0.91830 0.89821 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.70 12.77 55.43 0.71 -24.99 15 2 C 0.08 2.44 5.39 -17.82 -0.10 2.34 15 3 Si 0.88 21.85 29.54 -169.99 -5.02 16.83 15 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 7 C -0.54 -15.49 8.73 -34.44 -0.30 -15.79 15 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 15 9 C 0.24 6.15 2.94 -68.86 -0.20 5.95 15 10 H 0.03 0.90 8.14 -51.93 -0.42 0.47 15 11 N -0.81 -20.42 8.48 -5.65 -0.05 -20.47 15 12 C -0.01 -0.21 4.40 -3.82 -0.02 -0.23 15 13 N -0.48 -8.76 5.39 -238.63 -1.29 -10.05 15 14 C 0.00 -0.05 7.95 -2.77 -0.02 -0.07 15 15 C -0.15 -1.91 8.28 -25.80 -0.21 -2.12 15 16 C 0.00 0.08 7.96 -2.77 -0.02 0.05 15 17 H 0.25 7.38 8.31 -40.82 -0.34 7.04 15 18 H 0.31 7.63 8.99 -39.29 -0.35 7.28 15 19 H 0.30 7.17 8.38 -39.29 -0.33 6.84 15 20 H 0.03 0.65 7.38 -51.93 -0.38 0.27 15 21 H 0.06 1.25 8.08 -51.93 -0.42 0.83 15 22 H 0.06 0.88 7.92 -51.93 -0.41 0.46 15 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.08 1.34 8.14 -51.93 -0.42 0.91 15 27 H 0.07 1.04 7.48 -51.93 -0.39 0.66 15 LS Contribution 228.13 15.07 3.44 3.44 Total: -1.00 -30.33 228.13 -7.02 -37.35 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.94 Total: 7.76 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.87 Total: -9.87 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.63 Total: -55.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.33 -7.02 -37.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952999.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.847 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds