Wall clock time and date at job start Mon Mar 30 2020 01:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99619 * 2 1 4 4 H 1.48498 * 109.46923 * 239.99603 * 3 2 1 5 5 H 1.48494 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00133 * 3 2 1 7 7 C 1.37877 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99710 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47703 * 300.00399 * 9 7 2 11 11 N 1.46906 * 109.46930 * 60.00353 * 9 7 2 12 12 C 1.52995 * 109.47109 * 179.97438 * 9 7 2 13 13 N 1.46904 * 109.47198 * 185.00234 * 12 9 7 14 14 C 1.47960 * 110.99873 * 170.00015 * 13 12 9 15 15 C 1.53937 * 86.17949 * 137.58413 * 14 13 12 16 16 C 1.47958 * 111.00220 * 269.36017 * 13 12 9 17 17 H 0.96994 * 120.00739 * 0.02562 * 1 2 3 18 18 H 1.00907 * 111.00013 * 59.99787 * 11 9 7 19 19 H 1.00903 * 111.00122 * 183.94984 * 11 9 7 20 20 H 1.09003 * 109.47012 * 65.00668 * 12 9 7 21 21 H 1.08999 * 109.47681 * 305.00270 * 12 9 7 22 22 H 1.09001 * 113.75911 * 23.26902 * 14 13 12 23 23 H 1.09004 * 113.76293 * 251.89925 * 14 13 12 24 24 H 1.09000 * 113.73632 * 90.63756 * 15 14 13 25 25 H 1.08998 * 113.73683 * 221.91814 * 15 14 13 26 26 H 1.09001 * 113.75711 * 108.10017 * 16 13 12 27 27 H 1.08998 * 113.76069 * 336.74148 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6248 -2.5564 0.8918 11 7 0.4062 -2.5778 -1.1975 12 6 2.2454 -3.6620 0.0015 13 7 1.5149 -4.9309 -0.1182 14 6 2.4438 -6.0565 -0.3614 15 6 1.5910 -6.8439 0.6497 16 6 1.1741 -5.4743 1.2151 17 1 -0.4851 0.8399 -0.0004 18 1 0.9639 -2.5269 -2.0368 19 1 -0.1577 -3.4145 -1.1882 20 1 2.8123 -3.6555 0.9325 21 1 2.9290 -3.5555 -0.8409 22 1 3.4623 -5.8665 -0.0228 23 1 2.3985 -6.4520 -1.3762 24 1 0.7707 -7.3985 0.1939 25 1 2.1776 -7.4452 1.3443 26 1 0.1142 -5.4044 1.4600 27 1 1.8211 -5.1138 2.0148 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259952999.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:18 Heat of formation + Delta-G solvation = 10.733945 kcal Electronic energy + Delta-G solvation = -9985.372904 eV Core-core repulsion = 8164.138294 eV Total energy + Delta-G solvation = -1821.234610 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.60994 -36.46664 -33.59445 -30.36975 -28.14245 -26.96391 -25.25126 -21.76418 -20.66242 -18.57531 -16.85163 -16.59809 -16.42672 -15.97719 -15.26926 -14.51388 -13.95936 -13.81427 -13.40937 -12.82877 -12.70238 -12.40164 -12.23986 -11.89041 -11.68682 -11.41548 -10.96356 -10.52997 -9.72201 -8.68447 -7.96241 -6.19907 1.42903 1.44856 1.52226 2.46234 3.09797 3.27667 3.63733 3.96410 4.23219 4.39079 4.49385 4.55823 4.71276 4.79592 4.83890 4.94390 5.00104 5.30297 5.41226 5.67240 5.76801 6.07538 6.25583 6.73816 7.21398 7.42764 7.54027 9.07343 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095865 B = 0.011430 C = 0.011017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.006861 B = 2449.194578 C = 2540.985398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.032 3.968 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.562 4.562 8 H 0.049 0.951 9 C 0.237 3.763 10 H -0.007 1.007 11 N -0.815 5.815 12 C 0.010 3.990 13 N -0.499 5.499 14 C -0.004 4.004 15 C -0.123 4.123 16 C -0.006 4.006 17 H 0.255 0.745 18 H 0.314 0.686 19 H 0.314 0.686 20 H 0.026 0.974 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -10.571 0.798 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.601 4.601 8 H 0.067 0.933 9 C 0.127 3.873 10 H 0.011 0.989 11 N -0.341 5.341 12 C -0.121 4.121 13 N -0.222 5.222 14 C -0.132 4.132 15 C -0.161 4.161 16 C -0.135 4.135 17 H 0.063 0.937 18 H 0.125 0.875 19 H 0.125 0.875 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.386 -9.614 0.600 10.210 hybrid contribution 1.531 0.234 0.411 1.602 sum 4.917 -9.379 1.011 10.638 Atomic orbital electron populations 1.70250 1.07275 1.26374 1.47969 1.25746 0.95444 1.02100 0.93882 0.85751 0.78430 0.79383 0.78701 1.19730 1.21041 1.19661 1.21335 0.92325 0.92169 1.54264 0.93324 1.18617 0.88842 0.90435 0.89456 0.98934 1.58974 1.28332 1.43102 1.03724 1.23349 0.97194 0.92784 0.98790 1.68416 1.30572 1.01093 1.22070 1.23940 0.95638 0.92195 1.01460 1.23208 0.99934 0.95224 0.97711 1.23957 1.01901 0.96017 0.91655 0.93657 0.87521 0.87452 0.95532 0.92785 0.91451 0.88984 0.88434 0.89127 0.90455 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.17 12.77 21.45 0.27 -53.89 15 2 C 0.03 1.84 5.39 84.66 0.46 2.29 15 3 Si 0.95 44.91 29.54 68.60 2.03 46.93 15 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.56 -32.32 8.73 25.60 0.22 -32.10 15 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 15 9 C 0.24 12.52 2.94 44.17 0.13 12.65 15 10 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 15 11 N -0.82 -41.62 8.48 -171.80 -1.46 -43.08 15 12 C 0.01 0.41 4.40 86.30 0.38 0.79 15 13 N -0.50 -17.71 5.39 -908.89 -4.90 -22.61 15 14 C 0.00 -0.10 7.95 86.41 0.69 0.59 15 15 C -0.12 -2.80 8.28 31.24 0.26 -2.55 15 16 C -0.01 -0.19 7.96 86.40 0.69 0.49 15 17 H 0.25 14.88 8.31 -92.71 -0.77 14.11 15 18 H 0.31 15.48 8.99 -89.69 -0.81 14.67 15 19 H 0.31 14.85 8.38 -89.69 -0.75 14.09 15 20 H 0.03 1.13 7.38 -2.39 -0.02 1.11 15 21 H 0.05 2.31 8.08 -2.39 -0.02 2.29 15 22 H 0.07 1.75 7.92 -2.39 -0.02 1.73 15 23 H 0.09 2.26 8.14 -2.38 -0.02 2.24 15 24 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 27 H 0.06 1.96 7.48 -2.39 -0.02 1.94 15 Total: -1.00 -64.26 228.13 -1.64 -65.90 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: -0.40 Total: 24.58 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 2.82 Total: -17.83 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -6.08 Total: -119.58 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.26 -1.64 -65.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259952999.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.636 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds