Wall clock time and date at job start Mon Mar 30 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00164 * 2 1 4 4 H 1.48498 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46814 * 299.99859 * 3 2 1 6 6 H 1.48497 * 109.47091 * 59.99466 * 3 2 1 7 7 C 1.37878 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00032 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47057 * 59.99808 * 9 7 2 11 11 N 1.46900 * 109.47063 * 299.99745 * 9 7 2 12 12 C 1.53005 * 109.47363 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47246 * 175.00087 * 12 9 7 14 14 C 1.47486 * 110.99866 * 169.99837 * 13 12 9 15 15 C 1.53506 * 87.93221 * 221.29388 * 14 13 12 16 16 C 1.47474 * 111.00100 * 74.02999 * 13 12 9 17 17 H 0.96992 * 120.00287 * 359.97438 * 1 2 3 18 18 H 1.00903 * 110.99597 * 176.04728 * 11 9 7 19 19 H 1.00897 * 111.00203 * 300.00167 * 11 9 7 20 20 H 1.09003 * 109.46918 * 54.99444 * 12 9 7 21 21 H 1.09004 * 109.46612 * 295.00378 * 12 9 7 22 22 H 1.09000 * 113.47378 * 336.06597 * 14 13 12 23 23 H 1.08999 * 113.47621 * 106.52788 * 14 13 12 24 24 H 1.09001 * 114.16921 * 139.66754 * 15 14 13 25 25 H 1.09003 * 114.17533 * 272.37734 * 15 14 13 26 26 H 1.09008 * 113.47506 * 253.46575 * 16 13 12 27 27 H 1.08998 * 113.48033 * 23.93349 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2453 -3.6621 0.0018 13 7 1.5147 -4.9308 0.1225 14 6 2.4092 -6.0800 -0.1105 15 6 1.2759 -6.7272 -0.9187 16 6 0.8375 -5.2731 -1.1420 17 1 -0.4850 0.8400 0.0004 18 1 -0.1578 -3.4134 1.1911 19 1 0.9638 -2.5251 2.0390 20 1 2.9288 -3.5548 0.8441 21 1 2.8122 -3.6564 -0.9292 22 1 3.2851 -5.8338 -0.7108 23 1 2.6607 -6.6259 0.7988 24 1 1.6077 -7.2372 -1.8231 25 1 0.5808 -7.3161 -0.3202 26 1 -0.2432 -5.1351 -1.1070 27 1 1.2938 -4.8116 -2.0178 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259953003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:19 Heat of formation + Delta-G solvation = 35.907561 kcal Electronic energy + Delta-G solvation = -10018.025256 eV Core-core repulsion = 8197.882256 eV Total energy + Delta-G solvation = -1820.143000 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.50062 -34.52423 -31.51362 -28.83760 -26.15368 -25.51691 -23.53817 -20.07012 -19.29155 -16.52205 -15.53871 -14.97929 -14.58639 -14.07171 -13.58012 -12.85012 -12.32902 -12.09484 -11.72384 -11.11021 -10.96606 -10.81496 -10.52764 -10.37881 -10.08891 -9.55116 -8.90987 -8.38813 -8.34389 -6.74258 -5.79289 -3.94333 3.36205 3.44156 3.47077 4.45583 4.59180 4.75901 5.17906 5.46817 5.64280 5.69904 5.86256 5.91189 5.99458 6.15164 6.19449 6.43654 6.68406 6.77058 6.98645 7.53553 7.67880 7.97400 8.34173 8.83623 9.24304 9.37431 9.74529 11.25428 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095302 B = 0.011647 C = 0.011164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.732244 B = 2403.564866 C = 2507.468052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.083 3.917 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.233 3.767 10 H 0.032 0.968 11 N -0.807 5.807 12 C -0.011 4.011 13 N -0.473 5.473 14 C -0.006 4.006 15 C -0.149 4.149 16 C 0.003 3.997 17 H 0.253 0.747 18 H 0.303 0.697 19 H 0.313 0.687 20 H 0.061 0.939 21 H 0.028 0.972 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 -9.496 -1.496 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.579 4.579 8 H 0.068 0.932 9 C 0.122 3.878 10 H 0.050 0.950 11 N -0.332 5.332 12 C -0.141 4.141 13 N -0.195 5.195 14 C -0.135 4.135 15 C -0.187 4.187 16 C -0.126 4.126 17 H 0.063 0.937 18 H 0.114 0.886 19 H 0.123 0.877 20 H 0.080 0.920 21 H 0.047 0.953 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.023 -8.589 -1.135 8.896 hybrid contribution 1.660 0.168 -0.519 1.747 sum 3.682 -8.421 -1.653 9.338 Atomic orbital electron populations 1.70128 1.05669 1.25327 1.47064 1.24939 0.94591 0.98471 0.94310 0.86741 0.80198 0.84644 0.77471 1.20014 1.21175 1.21051 1.20974 0.92145 0.90545 1.54278 0.93158 1.18904 0.88592 0.89461 0.90825 0.95019 1.59121 1.27989 1.42138 1.03951 1.23776 0.98875 0.92217 0.99281 1.68866 1.17704 1.02337 1.30624 1.23717 0.95667 0.94616 0.99512 1.23127 0.98779 0.96770 1.00019 1.23649 1.01386 0.94278 0.93281 0.93656 0.88629 0.87695 0.92023 0.95330 0.92068 0.90647 0.91431 0.89415 0.90100 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.56 12.77 55.43 0.71 -24.85 15 2 C 0.08 2.40 5.39 -17.82 -0.10 2.31 15 3 Si 0.88 21.78 29.54 -169.99 -5.02 16.75 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 7 C -0.54 -15.36 8.73 -34.44 -0.30 -15.66 15 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 15 9 C 0.23 5.99 2.68 -68.86 -0.18 5.81 15 10 H 0.03 0.90 7.80 -51.93 -0.40 0.50 15 11 N -0.81 -20.29 8.48 -5.65 -0.05 -20.34 15 12 C -0.01 -0.24 4.42 -3.83 -0.02 -0.25 15 13 N -0.47 -8.69 5.65 -244.69 -1.38 -10.07 15 14 C -0.01 -0.09 7.70 -7.55 -0.06 -0.14 15 15 C -0.15 -1.96 8.47 -26.20 -0.22 -2.18 15 16 C 0.00 0.05 7.08 -7.55 -0.05 0.00 15 17 H 0.25 7.28 8.31 -40.82 -0.34 6.94 15 18 H 0.30 7.07 8.38 -39.29 -0.33 6.74 15 19 H 0.31 7.66 8.99 -39.29 -0.35 7.31 15 20 H 0.06 1.35 8.14 -51.93 -0.42 0.93 15 21 H 0.03 0.61 7.56 -51.93 -0.39 0.21 15 22 H 0.06 0.89 7.77 -51.93 -0.40 0.49 15 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.08 1.35 8.14 -51.92 -0.42 0.93 15 27 H 0.07 1.11 7.70 -51.93 -0.40 0.71 15 LS Contribution 227.19 15.07 3.42 3.42 Total: -1.00 -30.14 227.19 -7.19 -37.33 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -3.94 Total: 7.88 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.93 Total: -10.12 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.72 Total: -55.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.14 -7.19 -37.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.233 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds