Wall clock time and date at job start Mon Mar 30 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00164 * 2 1 4 4 H 1.48498 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46814 * 299.99859 * 3 2 1 6 6 H 1.48497 * 109.47091 * 59.99466 * 3 2 1 7 7 C 1.37878 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99888 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00032 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47057 * 59.99808 * 9 7 2 11 11 N 1.46900 * 109.47063 * 299.99745 * 9 7 2 12 12 C 1.53005 * 109.47363 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47246 * 175.00087 * 12 9 7 14 14 C 1.47486 * 110.99866 * 169.99837 * 13 12 9 15 15 C 1.53506 * 87.93221 * 221.29388 * 14 13 12 16 16 C 1.47474 * 111.00100 * 74.02999 * 13 12 9 17 17 H 0.96992 * 120.00287 * 359.97438 * 1 2 3 18 18 H 1.00903 * 110.99597 * 176.04728 * 11 9 7 19 19 H 1.00897 * 111.00203 * 300.00167 * 11 9 7 20 20 H 1.09003 * 109.46918 * 54.99444 * 12 9 7 21 21 H 1.09004 * 109.46612 * 295.00378 * 12 9 7 22 22 H 1.09000 * 113.47378 * 336.06597 * 14 13 12 23 23 H 1.08999 * 113.47621 * 106.52788 * 14 13 12 24 24 H 1.09001 * 114.16921 * 139.66754 * 15 14 13 25 25 H 1.09003 * 114.17533 * 272.37734 * 15 14 13 26 26 H 1.09008 * 113.47506 * 253.46575 * 16 13 12 27 27 H 1.08998 * 113.48033 * 23.93349 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2453 -3.6621 0.0018 13 7 1.5147 -4.9308 0.1225 14 6 2.4092 -6.0800 -0.1105 15 6 1.2759 -6.7272 -0.9187 16 6 0.8375 -5.2731 -1.1420 17 1 -0.4850 0.8400 0.0004 18 1 -0.1578 -3.4134 1.1911 19 1 0.9638 -2.5251 2.0390 20 1 2.9288 -3.5548 0.8441 21 1 2.8122 -3.6564 -0.9292 22 1 3.2851 -5.8338 -0.7108 23 1 2.6607 -6.6259 0.7988 24 1 1.6077 -7.2372 -1.8231 25 1 0.5808 -7.3161 -0.3202 26 1 -0.2432 -5.1351 -1.1070 27 1 1.2938 -4.8116 -2.0178 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259953003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:19 Heat of formation + Delta-G solvation = 12.043346 kcal Electronic energy + Delta-G solvation = -10019.060086 eV Core-core repulsion = 8197.882256 eV Total energy + Delta-G solvation = -1821.177830 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.86000 -36.48917 -33.61663 -30.46430 -28.17932 -26.78772 -25.31126 -21.84774 -20.65369 -18.61177 -16.86675 -16.62844 -16.47929 -15.94893 -15.22971 -14.62368 -13.94842 -13.81859 -13.35758 -12.88999 -12.69025 -12.48624 -12.27638 -11.86452 -11.62614 -11.37948 -10.99872 -10.55145 -9.81510 -8.72730 -7.98066 -6.21176 1.41574 1.42990 1.54056 2.45432 3.18141 3.27023 3.57448 3.98362 4.25726 4.36376 4.49633 4.53847 4.69857 4.73981 4.84428 4.95688 4.97120 5.27418 5.39683 5.62595 5.75627 6.04646 6.24768 6.72027 7.18744 7.39320 7.52665 9.06010 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095302 B = 0.011647 C = 0.011164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.732244 B = 2403.564866 C = 2507.468052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.032 3.968 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.560 4.560 8 H 0.048 0.952 9 C 0.234 3.766 10 H -0.003 1.003 11 N -0.815 5.815 12 C 0.008 3.992 13 N -0.490 5.490 14 C -0.007 4.007 15 C -0.123 4.123 16 C -0.008 4.008 17 H 0.255 0.745 18 H 0.313 0.687 19 H 0.316 0.684 20 H 0.056 0.944 21 H 0.025 0.975 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -10.276 -1.486 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.599 4.599 8 H 0.067 0.933 9 C 0.124 3.876 10 H 0.015 0.985 11 N -0.341 5.341 12 C -0.123 4.123 13 N -0.212 5.212 14 C -0.136 4.136 15 C -0.160 4.160 16 C -0.137 4.137 17 H 0.064 0.936 18 H 0.124 0.876 19 H 0.126 0.874 20 H 0.074 0.926 21 H 0.043 0.957 22 H 0.084 0.916 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.886 -9.387 -1.126 9.885 hybrid contribution 1.371 0.356 -0.533 1.514 sum 4.257 -9.032 -1.660 10.122 Atomic orbital electron populations 1.70262 1.07238 1.26267 1.48088 1.25741 0.95451 1.02098 0.93877 0.85631 0.79029 0.80026 0.77524 1.19270 1.20590 1.20724 1.21369 0.92327 0.92100 1.54074 0.93347 1.18680 0.88802 0.90520 0.89610 0.98475 1.58975 1.28355 1.42986 1.03825 1.23352 0.97560 0.92587 0.98803 1.68839 1.18747 1.01793 1.31829 1.23824 0.95968 0.93055 1.00705 1.23061 0.97523 0.94622 1.00844 1.23739 1.00677 0.97105 0.92201 0.93642 0.87576 0.87369 0.92569 0.95664 0.91586 0.89204 0.88720 0.88105 0.91027 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.78 12.77 21.45 0.27 -53.51 15 2 C 0.03 1.83 5.39 84.65 0.46 2.28 15 3 Si 0.95 44.83 29.54 68.60 2.03 46.85 15 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 7 C -0.56 -32.05 8.73 25.60 0.22 -31.82 15 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 15 9 C 0.23 12.26 2.68 44.17 0.12 12.37 15 10 H 0.00 -0.16 7.80 -2.39 -0.02 -0.18 15 11 N -0.82 -41.35 8.48 -171.80 -1.46 -42.81 15 12 C 0.01 0.34 4.42 86.31 0.38 0.72 15 13 N -0.49 -17.46 5.65 -928.05 -5.24 -22.70 15 14 C -0.01 -0.18 7.70 83.57 0.64 0.46 15 15 C -0.12 -2.84 8.47 30.94 0.26 -2.58 15 16 C -0.01 -0.26 7.08 83.57 0.59 0.34 15 17 H 0.25 14.72 8.31 -92.71 -0.77 13.95 15 18 H 0.31 14.66 8.38 -89.69 -0.75 13.91 15 19 H 0.32 15.52 8.99 -89.70 -0.81 14.71 15 20 H 0.06 2.43 8.14 -2.39 -0.02 2.41 15 21 H 0.03 1.07 7.56 -2.38 -0.02 1.05 15 22 H 0.07 1.75 7.77 -2.39 -0.02 1.73 15 23 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.07 2.38 8.14 -2.38 -0.02 2.36 15 27 H 0.06 1.92 7.70 -2.39 -0.02 1.90 15 Total: -1.00 -63.71 227.19 -2.12 -65.83 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.40 Total: 24.57 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 2.68 Total: -18.23 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.42 Total: -119.02 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.71 -2.12 -65.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259953003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.878 kcal (2) G-P(sol) polarization free energy of solvation -63.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds