Wall clock time and date at job start Mon Mar 30 2020 02:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48312 * 111.10154 * 2 1 4 4 C 1.53934 * 86.18096 * 137.54149 * 3 2 1 5 5 C 1.47962 * 110.99871 * 99.24480 * 2 1 3 6 6 H 1.09002 * 113.76170 * 336.74155 * 5 2 1 7 7 C 1.52998 * 113.75481 * 107.99435 * 5 2 1 8 8 O 1.42898 * 109.47263 * 273.68294 * 7 5 2 9 9 C 1.34931 * 116.99994 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00223 * 0.02562 * 9 8 7 11 11 C 1.38639 * 119.99725 * 180.02562 * 9 8 7 12 12 N 1.31583 * 119.99886 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99742 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46839 * 89.99926 * 13 11 9 15 15 H 1.48501 * 109.46686 * 209.99617 * 13 11 9 16 16 H 1.48498 * 109.47104 * 329.99552 * 13 11 9 17 17 H 1.09001 * 109.47752 * 320.74975 * 1 2 3 18 18 H 1.09004 * 109.47153 * 80.75453 * 1 2 3 19 19 H 1.09001 * 109.46843 * 200.75294 * 1 2 3 20 20 H 1.08990 * 113.76260 * 23.22559 * 3 2 1 21 21 H 1.09004 * 113.75511 * 251.85819 * 3 2 1 22 22 H 1.09001 * 113.73304 * 221.91674 * 4 3 2 23 23 H 1.09009 * 113.82931 * 90.65079 * 4 3 2 24 24 H 1.08997 * 109.47438 * 33.68994 * 7 5 2 25 25 H 1.09003 * 109.46835 * 153.68419 * 7 5 2 26 26 H 0.96998 * 119.99595 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0029 1.3837 0.0000 4 6 3.0232 0.8801 1.0368 5 6 1.9992 -0.2219 1.3634 6 1 1.3009 0.0483 2.1556 7 6 2.6239 -1.6040 1.5643 8 8 1.6063 -2.5381 1.9303 9 6 1.9936 -3.8125 2.1463 10 1 3.0329 -4.0863 2.0406 11 6 1.0572 -4.7703 2.5040 12 7 -0.2089 -4.4365 2.6332 13 14 1.5935 -6.5344 2.8037 14 1 1.9502 -6.7069 4.2349 15 1 0.4817 -7.4555 2.4562 16 1 2.7747 -6.8431 1.9584 17 1 -0.3635 0.7958 0.6502 18 1 -0.3634 0.1651 -1.0143 19 1 -0.3633 -0.9610 0.3641 20 1 1.3059 2.1234 0.3934 21 1 2.4509 1.6815 -0.9481 22 1 3.1949 1.5766 1.8575 23 1 3.9477 0.5040 0.5984 24 1 3.0973 -1.9271 0.6372 25 1 3.3719 -1.5530 2.3556 26 1 -0.8640 -5.1066 2.8838 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986268.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:11 Heat of formation + Delta-G solvation = -27.592385 kcal Electronic energy + Delta-G solvation = -9996.129336 eV Core-core repulsion = 8075.514110 eV Total energy + Delta-G solvation = -1920.615226 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.80506 -37.96733 -33.93191 -31.63901 -29.53444 -26.53285 -25.03608 -23.88283 -20.60260 -19.52158 -17.56132 -16.92514 -16.23645 -16.07143 -15.73879 -14.93753 -14.38035 -13.99961 -13.48048 -13.19881 -12.80268 -12.46834 -12.34327 -12.14449 -11.75239 -11.62431 -11.44480 -11.19384 -10.15174 -9.74402 -8.18496 -5.88081 1.38659 1.46012 1.55260 2.33111 2.97544 3.15371 3.49062 3.68970 4.14594 4.25154 4.36115 4.43983 4.58624 4.67560 4.70745 4.80388 4.85692 4.95783 5.01056 5.22239 5.26569 5.51952 6.14663 6.20496 7.24243 8.06308 9.06768 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.088998 B = 0.011157 C = 0.010313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.538709 B = 2508.979404 C = 2714.358386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.505 5.505 3 C 0.007 3.993 4 C -0.121 4.121 5 C 0.030 3.970 6 H 0.068 0.932 7 C 0.084 3.916 8 O -0.337 6.337 9 C -0.380 4.380 10 H 0.071 0.929 11 C -0.044 4.044 12 N -0.941 5.941 13 Si 1.008 2.992 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.260 1.260 17 H 0.045 0.955 18 H 0.081 0.919 19 H 0.035 0.965 20 H 0.084 0.916 21 H 0.105 0.895 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.026 0.974 25 H 0.037 0.963 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 9.350 -3.106 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 N -0.229 5.229 3 C -0.121 4.121 4 C -0.159 4.159 5 C -0.079 4.079 6 H 0.086 0.914 7 C 0.007 3.993 8 O -0.253 6.253 9 C -0.459 4.459 10 H 0.088 0.912 11 C -0.236 4.236 12 N -0.586 5.586 13 Si 0.830 3.170 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.184 1.184 17 H 0.063 0.937 18 H 0.099 0.901 19 H 0.054 0.946 20 H 0.102 0.898 21 H 0.123 0.877 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.102 8.903 -3.601 10.875 hybrid contribution -0.313 -0.481 0.782 0.970 sum 4.789 8.423 -2.819 10.091 Atomic orbital electron populations 1.22711 0.89711 1.00463 1.02034 1.68553 1.09608 1.20121 1.24568 1.24037 0.97110 0.90121 1.00858 1.23308 0.97482 0.95562 0.99500 1.23449 0.98227 0.94645 0.91623 0.91436 1.22266 0.90943 0.89166 0.96926 1.85565 1.33648 1.18074 1.87992 1.21362 0.94173 0.84686 1.45677 0.91172 1.26272 0.94971 1.03934 0.98466 1.70203 1.02263 1.35388 1.50713 0.84722 0.77832 0.75542 0.78895 1.19287 1.20306 1.18394 0.93689 0.90070 0.94619 0.89806 0.87667 0.88443 0.88573 0.95561 0.94514 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.65 127.69 1.23 1.23 15 2 N -0.51 -18.40 6.37 -906.41 -5.77 -24.18 15 3 C 0.01 0.17 7.98 86.34 0.69 0.86 15 4 C -0.12 -3.18 7.85 31.24 0.25 -2.93 15 5 C 0.03 1.16 3.60 45.02 0.16 1.32 15 6 H 0.07 2.74 7.92 -2.39 -0.02 2.72 15 7 C 0.08 4.00 6.05 71.98 0.44 4.44 15 8 O -0.34 -20.79 9.78 -82.01 -0.80 -21.59 15 9 C -0.38 -23.65 9.89 67.92 0.67 -22.98 15 10 H 0.07 4.07 7.77 -2.91 -0.02 4.04 15 11 C -0.04 -2.68 5.49 84.83 0.47 -2.21 15 12 N -0.94 -61.89 13.68 21.61 0.30 -61.59 15 13 Si 1.01 46.53 29.55 68.60 2.03 48.56 15 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 15 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 16 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 17 H 0.04 1.41 7.63 -2.39 -0.02 1.39 15 18 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 19 H 0.03 1.61 8.14 -2.39 -0.02 1.59 15 20 H 0.08 1.81 7.63 -2.39 -0.02 1.79 15 21 H 0.11 2.22 8.14 -2.38 -0.02 2.20 15 22 H 0.10 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.10 2.41 8.10 -2.38 -0.02 2.39 15 24 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 25 H 0.04 1.63 8.14 -2.39 -0.02 1.62 15 26 H 0.26 15.87 8.31 -92.71 -0.77 15.10 15 Total: -1.00 -74.49 227.43 0.79 -73.70 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.14 Total: 5.38 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 3.90 Total: -20.28 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -5.48 Total: -85.77 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.80 Total: -21.59 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -74.49 0.79 -73.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986268.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.108 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds