Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47478 * 111.00152 * 2 1 4 4 C 1.53515 * 87.93283 * 221.29668 * 3 2 1 5 5 C 1.47485 * 110.99912 * 264.03127 * 2 1 3 6 6 H 1.09001 * 113.47320 * 23.87240 * 5 2 1 7 7 C 1.53001 * 113.47435 * 253.47134 * 5 2 1 8 8 O 1.42905 * 109.47242 * 84.50593 * 7 5 2 9 9 C 1.34922 * 117.00401 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99807 * 359.97438 * 9 8 7 11 11 C 1.38630 * 120.00579 * 179.97438 * 9 8 7 12 12 N 1.31584 * 119.99716 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00525 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47047 * 59.99741 * 13 11 9 15 15 H 1.48503 * 109.47429 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46804 * 300.00203 * 13 11 9 17 17 H 1.09002 * 109.47401 * 155.96850 * 1 2 3 18 18 H 1.09001 * 109.46874 * 35.96862 * 1 2 3 19 19 H 1.09004 * 109.46970 * 275.96996 * 1 2 3 20 20 H 1.08996 * 113.47930 * 336.06660 * 3 2 1 21 21 H 1.09000 * 113.47322 * 106.53019 * 3 2 1 22 22 H 1.08994 * 114.17415 * 272.37880 * 4 3 2 23 23 H 1.09004 * 114.16536 * 139.67073 * 4 3 2 24 24 H 1.09003 * 109.47147 * 204.50017 * 7 5 2 25 25 H 1.09000 * 109.47369 * 324.50622 * 7 5 2 26 26 H 0.97000 * 120.00533 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9976 1.3768 0.0000 4 6 3.0538 0.9120 -1.0125 5 6 1.9975 -0.1432 -1.3694 6 1 1.2996 0.1830 -2.1405 7 6 2.5887 -1.5256 -1.6531 8 8 1.5437 -2.4203 -2.0398 9 6 1.8992 -3.6897 -2.3275 10 1 2.9348 -3.9887 -2.2606 11 6 0.9353 -4.6101 -2.7090 12 7 -0.3264 -4.2457 -2.7910 13 14 1.4275 -6.3677 -3.1066 14 1 2.0619 -6.9857 -1.9147 15 1 0.2208 -7.1460 -3.4854 16 1 2.3912 -6.3682 -4.2365 17 1 -0.3634 -0.9386 -0.4185 18 1 -0.3633 0.8317 -0.6036 19 1 -0.3633 0.1069 1.0221 20 1 1.3001 2.1097 -0.4056 21 1 2.4187 1.6802 0.9585 22 1 3.9571 0.5038 -0.5594 23 1 3.2549 1.6291 -1.8084 24 1 3.3189 -1.4501 -2.4589 25 1 3.0766 -1.9035 -0.7547 26 1 -1.0010 -4.8897 -3.0575 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259986269.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = 1.517078 kcal Electronic energy + Delta-G solvation = -10013.863912 eV Core-core repulsion = 8094.510967 eV Total energy + Delta-G solvation = -1919.352945 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.66690 -35.84307 -31.66706 -30.28451 -27.82151 -24.30384 -23.75820 -22.18159 -19.24870 -17.35750 -15.78053 -15.21569 -14.74626 -14.40347 -13.83261 -13.10313 -12.79393 -12.39858 -11.55515 -11.40504 -11.13284 -11.00881 -10.83208 -10.43703 -10.38468 -9.87218 -9.42611 -9.07984 -8.45688 -7.88748 -5.88709 -3.51187 3.36025 3.37550 3.40801 4.35760 4.42428 4.78153 5.09784 5.43448 5.49661 5.60149 5.74307 5.86977 5.91033 5.99394 6.04120 6.33443 6.40135 6.55990 6.67124 6.75407 6.98563 7.52929 7.54769 8.49938 9.55106 10.25686 11.32867 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.088711 B = 0.011271 C = 0.010394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.555246 B = 2483.724906 C = 2693.256794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.467 5.467 3 C -0.007 4.007 4 C -0.141 4.141 5 C 0.038 3.962 6 H 0.080 0.920 7 C 0.087 3.913 8 O -0.296 6.296 9 C -0.356 4.356 10 H 0.060 0.940 11 C 0.021 3.979 12 N -0.892 5.892 13 Si 0.925 3.075 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.279 1.279 17 H 0.086 0.914 18 H 0.028 0.972 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.072 0.928 24 H 0.026 0.974 25 H 0.033 0.967 26 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 8.565 3.080 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.190 5.190 3 C -0.137 4.137 4 C -0.179 4.179 5 C -0.071 4.071 6 H 0.098 0.902 7 C 0.009 3.991 8 O -0.211 6.211 9 C -0.435 4.435 10 H 0.078 0.922 11 C -0.177 4.177 12 N -0.536 5.536 13 Si 0.752 3.248 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.205 1.205 17 H 0.105 0.895 18 H 0.046 0.954 19 H 0.080 0.920 20 H 0.081 0.919 21 H 0.098 0.902 22 H 0.110 0.890 23 H 0.091 0.909 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.975 8.066 3.569 9.675 hybrid contribution 0.029 -0.402 -0.780 0.878 sum 4.005 7.664 2.789 9.086 Atomic orbital electron populations 1.22852 0.89286 1.02547 1.01019 1.68876 1.09840 1.16943 1.23324 1.23775 0.97482 0.92530 0.99867 1.23166 0.97778 0.98099 0.98865 1.23369 0.96284 0.95979 0.91463 0.90189 1.22033 0.91181 0.88866 0.96988 1.85609 1.29737 1.19544 1.86255 1.20763 0.93256 0.85192 1.44337 0.92177 1.24931 0.94991 0.98521 0.99208 1.70006 0.99883 1.34203 1.49467 0.86048 0.77465 0.82734 0.78533 1.20409 1.20931 1.20452 0.89509 0.95387 0.92022 0.91870 0.90234 0.89036 0.90904 0.95575 0.94906 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.69 60.07 0.58 0.44 15 2 N -0.47 -8.75 6.52 -244.80 -1.60 -10.35 15 3 C -0.01 -0.11 7.70 -7.55 -0.06 -0.16 15 4 C -0.14 -2.05 8.01 -26.20 -0.21 -2.26 15 5 C 0.04 0.74 3.38 -71.44 -0.24 0.50 15 6 H 0.08 1.59 7.91 -51.93 -0.41 1.18 15 7 C 0.09 2.04 6.03 37.16 0.22 2.26 15 8 O -0.30 -8.83 9.78 -16.49 -0.16 -8.99 15 9 C -0.36 -10.86 9.89 30.88 0.31 -10.56 15 10 H 0.06 1.73 7.77 -52.49 -0.41 1.32 15 11 C 0.02 0.64 5.49 -17.51 -0.10 0.54 15 12 N -0.89 -28.59 13.67 55.48 0.76 -27.83 15 13 Si 0.92 22.64 29.55 -169.99 -5.02 17.62 15 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 17 H 0.09 1.89 8.14 -51.93 -0.42 1.47 15 18 H 0.03 0.45 7.52 -51.93 -0.39 0.06 15 19 H 0.06 0.99 8.14 -51.93 -0.42 0.56 15 20 H 0.06 0.82 7.54 -51.93 -0.39 0.43 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.09 1.28 8.12 -51.93 -0.42 0.86 15 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 227.06 15.07 3.42 3.42 Total: -1.00 -33.60 227.06 -5.79 -39.39 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -3.69 Total: -4.02 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 0.51 Total: -9.24 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.84 Total: -38.18 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.16 Total: -8.99 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -33.60 -5.79 -39.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986269.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.908 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds