Wall clock time and date at job start Mon Mar 30 2020 02:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47478 * 111.00152 * 2 1 4 4 C 1.53515 * 87.93283 * 221.29668 * 3 2 1 5 5 C 1.47485 * 110.99912 * 264.03127 * 2 1 3 6 6 H 1.09001 * 113.47320 * 23.87240 * 5 2 1 7 7 C 1.53001 * 113.47435 * 253.47134 * 5 2 1 8 8 O 1.42905 * 109.47242 * 84.50593 * 7 5 2 9 9 C 1.34922 * 117.00401 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99807 * 359.97438 * 9 8 7 11 11 C 1.38630 * 120.00579 * 179.97438 * 9 8 7 12 12 N 1.31584 * 119.99716 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00525 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47047 * 59.99741 * 13 11 9 15 15 H 1.48503 * 109.47429 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46804 * 300.00203 * 13 11 9 17 17 H 1.09002 * 109.47401 * 155.96850 * 1 2 3 18 18 H 1.09001 * 109.46874 * 35.96862 * 1 2 3 19 19 H 1.09004 * 109.46970 * 275.96996 * 1 2 3 20 20 H 1.08996 * 113.47930 * 336.06660 * 3 2 1 21 21 H 1.09000 * 113.47322 * 106.53019 * 3 2 1 22 22 H 1.08994 * 114.17415 * 272.37880 * 4 3 2 23 23 H 1.09004 * 114.16536 * 139.67073 * 4 3 2 24 24 H 1.09003 * 109.47147 * 204.50017 * 7 5 2 25 25 H 1.09000 * 109.47369 * 324.50622 * 7 5 2 26 26 H 0.97000 * 120.00533 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9976 1.3768 0.0000 4 6 3.0538 0.9120 -1.0125 5 6 1.9975 -0.1432 -1.3694 6 1 1.2996 0.1830 -2.1405 7 6 2.5887 -1.5256 -1.6531 8 8 1.5437 -2.4203 -2.0398 9 6 1.8992 -3.6897 -2.3275 10 1 2.9348 -3.9887 -2.2606 11 6 0.9353 -4.6101 -2.7090 12 7 -0.3264 -4.2457 -2.7910 13 14 1.4275 -6.3677 -3.1066 14 1 2.0619 -6.9857 -1.9147 15 1 0.2208 -7.1460 -3.4854 16 1 2.3912 -6.3682 -4.2365 17 1 -0.3634 -0.9386 -0.4185 18 1 -0.3633 0.8317 -0.6036 19 1 -0.3633 0.1069 1.0221 20 1 1.3001 2.1097 -0.4056 21 1 2.4187 1.6802 0.9585 22 1 3.9571 0.5038 -0.5594 23 1 3.2549 1.6291 -1.8084 24 1 3.3189 -1.4501 -2.4589 25 1 3.0766 -1.9035 -0.7547 26 1 -1.0010 -4.8897 -3.0575 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986269.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:12 Heat of formation + Delta-G solvation = -25.189342 kcal Electronic energy + Delta-G solvation = -10015.021990 eV Core-core repulsion = 8094.510967 eV Total energy + Delta-G solvation = -1920.511023 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.05012 -37.97354 -33.92988 -31.71855 -29.49658 -26.50729 -25.13004 -23.75761 -20.68076 -19.53933 -17.55318 -16.95817 -16.23298 -16.06442 -15.74321 -14.92291 -14.36442 -14.04278 -13.46495 -13.18727 -12.77170 -12.47371 -12.38791 -12.17231 -11.82676 -11.54388 -11.38677 -11.18916 -10.14858 -9.84149 -8.18210 -5.87851 1.38448 1.47098 1.53966 2.33309 3.06986 3.16485 3.45913 3.67669 4.13715 4.26450 4.35845 4.42575 4.55936 4.67970 4.71911 4.79330 4.85849 4.96907 5.01414 5.21814 5.24855 5.48794 6.15363 6.20434 7.24363 8.06465 9.06757 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.088711 B = 0.011271 C = 0.010394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.555246 B = 2483.724906 C = 2693.256794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.497 5.497 3 C 0.002 3.998 4 C -0.120 4.120 5 C 0.027 3.973 6 H 0.067 0.933 7 C 0.082 3.918 8 O -0.336 6.336 9 C -0.381 4.381 10 H 0.070 0.930 11 C -0.043 4.043 12 N -0.940 5.940 13 Si 1.008 2.992 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.262 1.262 17 H 0.035 0.965 18 H 0.046 0.954 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.101 0.899 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.036 0.964 25 H 0.026 0.974 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 9.051 3.281 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 N -0.220 5.220 3 C -0.126 4.126 4 C -0.158 4.158 5 C -0.083 4.083 6 H 0.086 0.914 7 C 0.004 3.996 8 O -0.252 6.252 9 C -0.460 4.460 10 H 0.088 0.912 11 C -0.236 4.236 12 N -0.585 5.585 13 Si 0.829 3.171 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.187 1.187 17 H 0.055 0.945 18 H 0.065 0.935 19 H 0.100 0.900 20 H 0.100 0.900 21 H 0.120 0.880 22 H 0.117 0.883 23 H 0.120 0.880 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.247 8.584 3.781 10.747 hybrid contribution -0.337 -0.470 -0.802 0.989 sum 4.909 8.114 2.979 9.940 Atomic orbital electron populations 1.22743 0.89588 1.00546 1.02164 1.68857 1.09843 1.20599 1.22685 1.23846 0.97165 0.90429 1.01140 1.23162 0.96829 0.96279 0.99489 1.23441 0.98359 0.94724 0.91740 0.91449 1.22337 0.90659 0.89893 0.96666 1.85564 1.32952 1.20076 1.86640 1.21322 0.94017 0.86041 1.44621 0.91220 1.26263 0.94803 1.03938 0.98602 1.70193 1.01420 1.36315 1.50610 0.84799 0.77606 0.75631 0.79023 1.19004 1.20251 1.18652 0.94547 0.93498 0.90047 0.90004 0.88031 0.88346 0.87981 0.94635 0.95625 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 9.69 127.69 1.24 1.19 15 2 N -0.50 -18.19 6.52 -928.42 -6.05 -24.24 15 3 C 0.00 0.06 7.70 83.57 0.64 0.70 15 4 C -0.12 -3.13 8.01 30.94 0.25 -2.89 15 5 C 0.03 1.04 3.38 42.18 0.14 1.18 15 6 H 0.07 2.71 7.91 -2.39 -0.02 2.69 15 7 C 0.08 3.88 6.03 71.98 0.43 4.32 15 8 O -0.34 -20.75 9.78 -81.91 -0.80 -21.55 15 9 C -0.38 -23.73 9.89 67.91 0.67 -23.05 15 10 H 0.07 4.04 7.77 -2.91 -0.02 4.01 15 11 C -0.04 -2.65 5.49 84.82 0.47 -2.18 15 12 N -0.94 -61.84 13.67 21.61 0.30 -61.54 15 13 Si 1.01 46.51 29.55 68.60 2.03 48.54 15 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 15 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 16 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 17 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 18 H 0.05 1.48 7.52 -2.39 -0.02 1.46 15 19 H 0.08 2.55 8.14 -2.38 -0.02 2.53 15 20 H 0.08 1.81 7.54 -2.39 -0.02 1.79 15 21 H 0.10 2.17 8.14 -2.39 -0.02 2.16 15 22 H 0.10 2.46 8.12 -2.39 -0.02 2.44 15 23 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 26 H 0.26 15.90 8.31 -92.71 -0.77 15.13 15 Total: -1.00 -74.43 227.06 0.45 -73.98 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.14 Total: 5.55 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 3.84 Total: -20.74 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -5.76 Total: -85.79 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.80 Total: -21.55 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.43 0.45 -73.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986269.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.792 kcal (2) G-P(sol) polarization free energy of solvation -74.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds