Wall clock time and date at job start Mon Mar 30 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86805 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47088 * 269.73258 * 3 2 1 5 5 H 1.48506 * 109.46781 * 29.72633 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72735 * 3 2 1 7 7 C 1.38625 * 120.00080 * 179.73008 * 2 1 3 8 8 H 1.08000 * 119.99538 * 179.97438 * 7 2 1 9 9 O 1.34786 * 119.99667 * 359.97438 * 7 2 1 10 10 C 1.36004 * 116.99458 * 180.02562 * 9 7 2 11 11 C 1.38267 * 122.71450 * 179.97438 * 10 9 7 12 12 N 1.30049 * 116.83631 * 179.97438 * 11 10 9 13 13 S 1.69575 * 107.29286 * 0.02562 * 12 11 10 14 14 C 1.35627 * 122.72310 * 359.70842 * 10 9 7 15 15 H 0.97000 * 119.99815 * 0.26866 * 1 2 3 16 16 H 1.07995 * 121.58220 * 359.97438 * 11 10 9 17 17 H 1.08003 * 127.23837 * 359.97438 * 14 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.5031 2.0432 -1.4001 5 1 1.4444 2.6544 0.6943 6 1 3.5445 1.4419 0.7058 7 6 2.0090 -1.2005 0.0057 8 1 3.0890 -1.2004 0.0052 9 8 1.3350 -2.3677 0.0117 10 6 2.0758 -3.5083 0.0176 11 6 1.5072 -4.7686 0.0246 12 7 2.3236 -5.7810 0.0292 13 16 3.9003 -5.1571 0.0255 14 6 3.4321 -3.5017 0.0117 15 1 -0.4850 0.8401 -0.0039 16 1 0.4360 -4.9058 0.0261 17 1 4.0814 -2.6388 0.0017 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259991783.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:47 Heat of formation + Delta-G solvation = 11.155094 kcal Electronic energy + Delta-G solvation = -7670.640848 eV Core-core repulsion = 5922.792521 eV Total energy + Delta-G solvation = -1747.848328 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.87370 -36.08081 -32.31043 -29.24801 -25.96739 -23.45925 -19.64746 -18.01183 -17.48341 -15.73550 -14.56356 -14.19091 -13.79698 -13.04428 -12.33980 -12.15516 -11.74289 -11.06182 -10.59516 -10.46401 -10.07133 -9.73692 -8.99069 -8.60672 -7.28599 -6.53494 -4.10052 1.52264 2.42824 2.71320 3.05275 3.10038 3.14896 3.48074 3.90911 4.98229 5.09224 5.69174 6.17393 6.48882 6.83891 7.05013 7.24378 7.90514 8.90862 9.55644 10.64035 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.101236 B = 0.013388 C = 0.011874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 276.516329 B = 2090.867502 C = 2357.537777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.038 3.962 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.378 4.378 8 H 0.089 0.911 9 O -0.163 6.163 10 C 0.064 3.936 11 C 0.090 3.910 12 N -0.454 5.454 13 S 0.181 5.819 14 C -0.364 4.364 15 H 0.272 0.728 16 H 0.182 0.818 17 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -2.617 0.021 5.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.106 0.894 9 O -0.067 6.067 10 C 0.000 4.000 11 C -0.115 4.115 12 N -0.273 5.273 13 S 0.328 5.672 14 C -0.512 4.512 15 H 0.082 0.918 16 H 0.199 0.801 17 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.438 -4.291 0.042 6.927 hybrid contribution -0.559 2.523 -0.022 2.584 sum 4.879 -1.768 0.020 5.190 Atomic orbital electron populations 1.70046 1.05949 1.27904 1.45530 1.25318 0.95934 0.98874 0.96563 0.85655 0.78887 0.79774 0.78788 1.19802 1.20150 1.19161 1.21288 0.91663 0.80545 1.52056 0.89360 1.83952 1.32395 1.10332 1.79998 1.19527 0.89448 0.89729 1.01282 1.22124 1.01696 0.87253 1.00401 1.76649 1.00027 1.27224 1.23421 1.83145 1.12892 0.97203 1.73958 1.25455 0.98404 1.01935 1.25417 0.91846 0.80090 0.80950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.61 13.67 55.48 0.76 -23.85 13 2 C 0.04 1.02 5.49 -17.51 -0.10 0.93 13 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 13 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 13 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 13 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 13 7 C -0.38 -10.37 9.54 30.88 0.29 -10.08 13 8 H 0.09 2.25 5.64 -52.49 -0.30 1.96 13 9 O -0.16 -4.52 9.82 -0.62 -0.01 -4.53 13 10 C 0.06 1.53 6.63 -40.50 -0.27 1.26 13 11 C 0.09 1.87 11.27 -18.30 -0.21 1.66 13 12 N -0.45 -9.18 12.08 29.05 0.35 -8.83 13 13 S 0.18 3.43 23.71 -107.50 -2.55 0.88 13 14 C -0.36 -7.90 10.28 29.80 0.31 -7.60 13 15 H 0.27 7.12 8.31 -40.82 -0.34 6.78 13 16 H 0.18 3.29 8.06 -52.49 -0.42 2.87 13 17 H 0.17 3.62 6.43 -52.48 -0.34 3.28 13 LS Contribution 181.82 15.07 2.74 2.74 Total: -1.00 -29.26 181.82 -3.89 -33.15 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -0.19 Total: -0.80 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 0.03 Total: -13.83 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 1.11 Total: -32.68 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.01 Total: -4.53 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.55 Total: 0.88 kcal Total LS contribution 2.74 Total: 2.74 kcal Total: -29.26 -3.89 -33.15 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991783.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.301 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds