Wall clock time and date at job start Mon Mar 30 2020 02:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47230 * 179.97438 * 11 10 9 13 13 H 1.09008 * 112.74819 * 45.33059 * 12 11 10 14 14 C 1.53510 * 113.47778 * 176.10402 * 12 11 10 15 15 C 1.53628 * 83.53767 * 140.77148 * 14 12 11 16 16 N 1.47479 * 113.47696 * 274.56253 * 12 11 10 17 17 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 19 19 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 20 20 H 1.09001 * 109.46918 * 299.99649 * 11 10 9 21 21 H 1.08999 * 109.46857 * 59.99535 * 11 10 9 22 22 H 1.09002 * 114.17259 * 254.44009 * 14 12 11 23 23 H 1.08999 * 114.16698 * 27.14394 * 14 12 11 24 24 H 1.08997 * 113.52069 * 219.23988 * 15 14 12 25 25 H 1.09006 * 113.41883 * 88.79023 * 15 14 12 26 26 H 1.00901 * 111.00221 * 329.91862 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8755 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 1 3.4458 -5.7540 0.7133 14 6 2.0887 -7.3826 0.0933 15 6 3.2051 -7.7013 -0.9129 16 7 3.1399 -6.2944 -1.3503 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5568 -0.8903 19 1 0.6247 -2.5571 0.8897 20 1 0.9448 -4.9828 0.8887 21 1 0.9453 -4.9822 -0.8913 22 1 2.2202 -7.8495 1.0694 23 1 1.0813 -7.4944 -0.3076 24 1 2.9056 -8.4103 -1.6846 25 1 4.1513 -7.9659 -0.4407 26 1 2.4171 -6.1639 -2.0421 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260014042.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:13 Heat of formation + Delta-G solvation = -18.268972 kcal Electronic energy + Delta-G solvation = -9697.681986 eV Core-core repulsion = 7777.471053 eV Total energy + Delta-G solvation = -1920.210933 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.64458 -36.32558 -32.69369 -28.84394 -27.15796 -26.54349 -22.69704 -22.15142 -20.28075 -16.57491 -15.58575 -15.40823 -15.18793 -14.61810 -14.17829 -13.25613 -12.95657 -12.75967 -12.04923 -11.42713 -11.28508 -10.89254 -10.79628 -10.67408 -10.41887 -9.91409 -9.08506 -8.85698 -8.42586 -8.16770 -6.10030 -4.11456 3.30756 3.37001 3.44366 4.17034 4.35319 4.46607 4.78805 5.10103 5.26586 5.49706 5.58092 5.66231 5.74820 5.81941 5.88001 6.05546 6.27088 6.48828 7.08778 7.41738 7.44788 7.81445 8.15771 8.57895 9.02518 9.53515 11.01689 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.117185 B = 0.008582 C = 0.008240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 238.881168 B = 3261.791547 C = 3397.091237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.193 3.807 10 O -0.389 6.389 11 C 0.062 3.938 12 C 0.051 3.949 13 H 0.112 0.888 14 C -0.189 4.189 15 C 0.011 3.989 16 N -0.644 5.644 17 H 0.263 0.737 18 H 0.005 0.995 19 H 0.005 0.995 20 H 0.044 0.956 21 H 0.036 0.964 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -11.835 -0.212 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.308 6.308 11 C -0.016 4.016 12 C -0.059 4.059 13 H 0.130 0.870 14 C -0.227 4.227 15 C -0.119 4.119 16 N -0.272 5.272 17 H 0.073 0.927 18 H 0.022 0.978 19 H 0.022 0.978 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.059 -11.360 -0.320 11.769 hybrid contribution -1.089 0.482 0.131 1.198 sum 1.970 -10.879 -0.189 11.057 Atomic orbital electron populations 1.69975 1.06132 1.27051 1.50786 1.24958 0.94982 0.99479 0.95131 0.86268 0.80088 0.82489 0.77590 1.19404 1.20835 1.20848 1.21110 0.94179 0.89298 1.50539 0.91403 1.20228 0.88815 0.83744 0.95311 1.87915 1.35200 1.12624 1.95101 1.22469 0.93921 0.86005 0.99253 1.23175 0.97246 0.92222 0.93231 0.87026 1.24472 0.99697 0.97276 1.01302 1.23414 0.98604 0.92624 0.97277 1.65649 1.45872 1.09924 1.05732 0.92723 0.97759 0.97755 0.93798 0.94543 0.90796 0.89700 0.91507 0.88754 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.91 22.20 29.54 -169.99 -5.02 17.17 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.51 -15.51 9.43 -34.44 -0.32 -15.84 15 8 H 0.07 2.05 7.81 -52.49 -0.41 1.64 15 9 C 0.19 5.46 5.69 36.01 0.20 5.66 15 10 O -0.39 -9.80 10.33 -35.23 -0.36 -10.16 15 11 C 0.06 1.18 5.88 37.16 0.22 1.40 15 12 C 0.05 0.81 4.36 -71.44 -0.31 0.50 15 13 H 0.11 1.84 8.14 -51.92 -0.42 1.42 15 14 C -0.19 -2.20 7.98 -26.14 -0.21 -2.41 15 15 C 0.01 0.13 8.62 -7.48 -0.06 0.06 15 16 N -0.64 -9.88 8.67 -115.26 -1.00 -10.88 15 17 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 18 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 15 19 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 15 20 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.04 0.67 7.79 -51.93 -0.40 0.26 15 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.08 0.93 8.12 -51.93 -0.42 0.50 15 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.34 4.89 8.33 -39.29 -0.33 4.56 15 LS Contribution 227.92 15.07 3.43 3.43 Total: -1.00 -31.98 227.92 -6.45 -38.44 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -3.66 Total: -2.34 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.58 Total: -9.09 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.26 Total: -37.46 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.36 Total: -10.16 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.98 -6.45 -38.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014042.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.167 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds