Wall clock time and date at job start Mon Mar 30 2020 02:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47171 * 180.02562 * 9 7 2 11 11 C 1.42902 * 114.00186 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47230 * 179.97438 * 11 10 9 13 13 H 1.09008 * 112.74819 * 45.33059 * 12 11 10 14 14 C 1.53510 * 113.47778 * 176.10402 * 12 11 10 15 15 C 1.53628 * 83.53767 * 140.77148 * 14 12 11 16 16 N 1.47479 * 113.47696 * 274.56253 * 12 11 10 17 17 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 19 19 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 20 20 H 1.09001 * 109.46918 * 299.99649 * 11 10 9 21 21 H 1.08999 * 109.46857 * 59.99535 * 11 10 9 22 22 H 1.09002 * 114.17259 * 254.44009 * 14 12 11 23 23 H 1.08999 * 114.16698 * 27.14394 * 14 12 11 24 24 H 1.08997 * 113.52069 * 219.23988 * 15 14 12 25 25 H 1.09006 * 113.41883 * 88.79023 * 15 14 12 26 26 H 1.00901 * 111.00221 * 329.91862 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8755 -0.0011 12 6 2.6481 -5.9562 -0.0017 13 1 3.4458 -5.7540 0.7133 14 6 2.0887 -7.3826 0.0933 15 6 3.2051 -7.7013 -0.9129 16 7 3.1399 -6.2944 -1.3503 17 1 -0.4850 0.8400 0.0004 18 1 0.6241 -2.5568 -0.8903 19 1 0.6247 -2.5571 0.8897 20 1 0.9448 -4.9828 0.8887 21 1 0.9453 -4.9822 -0.8913 22 1 2.2202 -7.8495 1.0694 23 1 1.0813 -7.4944 -0.3076 24 1 2.9056 -8.4103 -1.6846 25 1 4.1513 -7.9659 -0.4407 26 1 2.4171 -6.1639 -2.0421 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260014042.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:13 Heat of formation + Delta-G solvation = -43.369035 kcal Electronic energy + Delta-G solvation = -9698.770407 eV Core-core repulsion = 7777.471053 eV Total energy + Delta-G solvation = -1921.299353 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.80032 -38.22450 -34.93513 -30.56663 -28.66844 -28.03712 -24.59720 -23.73896 -21.38611 -18.74440 -17.40227 -16.86060 -16.81519 -16.30033 -15.67976 -14.76373 -14.68579 -13.85439 -13.67671 -13.22145 -13.01293 -12.69519 -12.62797 -12.21290 -11.81978 -11.48793 -11.28840 -10.92683 -10.30892 -9.52592 -8.34987 -6.47799 1.39150 1.40803 1.55933 2.33366 2.93480 2.98697 3.28714 3.56394 3.89291 4.14293 4.36322 4.47788 4.62025 4.74349 4.75133 4.85183 4.91609 5.10029 5.16874 5.31228 5.52634 5.92350 6.34141 6.49386 6.78177 7.24460 8.77680 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.117185 B = 0.008582 C = 0.008240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 238.881168 B = 3261.791547 C = 3397.091237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.043 3.957 13 H 0.101 0.899 14 C -0.167 4.167 15 C 0.017 3.983 16 N -0.672 5.672 17 H 0.272 0.728 18 H -0.014 1.014 19 H -0.012 1.012 20 H 0.052 0.948 21 H 0.043 0.957 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.671 -12.193 -0.213 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.132 3.868 10 O -0.328 6.328 11 C -0.024 4.024 12 C -0.067 4.067 13 H 0.119 0.881 14 C -0.206 4.206 15 C -0.112 4.112 16 N -0.300 5.300 17 H 0.081 0.919 18 H 0.004 0.996 19 H 0.006 0.994 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.111 0.889 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.120 0.880 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.533 -11.753 -0.320 12.277 hybrid contribution -1.266 0.508 0.119 1.370 sum 2.266 -11.245 -0.201 11.472 Atomic orbital electron populations 1.70069 1.07753 1.28708 1.50420 1.25980 0.96002 1.03427 0.93723 0.85102 0.78579 0.77097 0.78410 1.18955 1.19502 1.19401 1.21419 0.94071 0.90925 1.52463 0.92224 1.19862 0.88639 0.84757 0.93521 1.87868 1.35463 1.14322 1.95166 1.22839 0.95553 0.84146 0.99878 1.23210 0.96399 0.93316 0.93780 0.88142 1.24360 1.00230 0.93425 1.02562 1.23492 0.99031 0.90979 0.97719 1.65619 1.46148 1.12804 1.05465 0.91926 0.99623 0.99425 0.93019 0.93916 0.88893 0.88592 0.89119 0.87964 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.39 15 2 C 0.01 0.42 5.46 84.65 0.46 0.88 15 3 Si 0.99 45.20 29.54 68.60 2.03 47.23 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 7 C -0.55 -33.99 9.43 25.60 0.24 -33.74 15 8 H 0.06 3.68 7.81 -2.91 -0.02 3.65 15 9 C 0.21 12.08 5.69 71.24 0.41 12.49 15 10 O -0.41 -21.11 10.33 -148.98 -1.54 -22.65 15 11 C 0.05 2.05 5.88 71.98 0.42 2.47 15 12 C 0.04 1.33 4.36 42.19 0.18 1.52 15 13 H 0.10 3.29 8.14 -2.38 -0.02 3.27 15 14 C -0.17 -3.47 7.98 30.98 0.25 -3.22 15 15 C 0.02 0.35 8.62 83.61 0.72 1.07 15 16 N -0.67 -19.87 8.67 -518.59 -4.50 -24.36 15 17 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 18 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 15 19 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 15 20 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.04 1.57 7.79 -2.39 -0.02 1.55 15 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.10 1.81 8.12 -2.39 -0.02 1.79 15 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.10 1.93 8.14 -2.38 -0.02 1.91 15 26 H 0.34 9.55 8.33 -89.69 -0.75 8.80 15 Total: -1.00 -68.65 227.92 -0.63 -69.28 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.41 Total: 5.42 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 2.68 Total: -18.53 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -4.21 Total: -80.75 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.54 Total: -22.65 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.65 -0.63 -69.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014042.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.911 kcal (2) G-P(sol) polarization free energy of solvation -68.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds