Wall clock time and date at job start Mon Mar 30 2020 02:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 C 1.53005 * 113.73242 * 138.02883 * 4 3 2 6 6 O 1.42902 * 109.46982 * 174.99990 * 5 4 3 7 7 C 1.34926 * 116.99798 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99877 * 359.97438 * 7 6 5 9 9 C 1.38633 * 119.99874 * 179.97438 * 7 6 5 10 10 N 1.31578 * 120.00000 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00200 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47070 * 89.99761 * 11 9 7 13 13 H 1.48501 * 109.47101 * 209.99922 * 11 9 7 14 14 H 1.48506 * 109.46943 * 329.99705 * 11 9 7 15 15 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 16 16 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 17 17 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 19 19 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 20 20 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 21 21 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 22 22 H 1.09004 * 109.46796 * 294.99318 * 5 4 3 23 23 H 1.08992 * 109.47543 * 54.99429 * 5 4 3 24 24 H 0.97001 * 120.00408 * 180.02562 * 10 9 7 25 25 H 1.09005 * 113.65869 * 23.13541 * 15 2 1 26 26 H 1.09002 * 113.92722 * 251.82174 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 6 3.2586 1.8621 -2.1885 6 8 4.3011 1.3648 -3.0298 7 6 4.6352 2.1157 -4.1000 8 1 4.1207 3.0464 -4.2884 9 6 5.6388 1.6924 -4.9576 10 7 5.9649 2.4249 -6.0009 11 14 6.5281 0.0823 -4.6321 12 1 5.8157 -1.0245 -5.3196 13 1 7.9181 0.1716 -5.1471 14 1 6.5576 -0.1803 -3.1707 15 6 2.0019 -0.2232 -1.3646 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 2.4459 1.6803 0.9483 20 1 1.3003 2.1201 -0.3924 21 1 3.9474 0.5117 -0.5975 22 1 2.3424 1.9684 -2.7695 23 1 3.5482 2.8326 -1.7860 24 1 6.6669 2.1286 -6.6012 25 1 1.3025 0.0447 -2.1566 26 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049833.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:42 Heat of formation + Delta-G solvation = -1.442614 kcal Electronic energy + Delta-G solvation = -9892.582055 eV Core-core repulsion = 7973.100768 eV Total energy + Delta-G solvation = -1919.481287 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.67789 -36.26871 -31.99865 -30.83488 -26.68551 -25.91678 -23.89173 -21.77622 -19.39463 -17.48757 -15.98399 -15.41997 -14.96057 -14.69538 -13.85826 -13.54581 -12.76237 -12.50432 -12.40131 -11.78235 -11.42243 -10.95650 -10.66797 -10.51278 -10.42991 -9.91354 -9.52063 -9.26244 -8.71894 -8.14598 -5.98001 -3.65614 3.44176 3.46963 3.64375 4.09330 4.57901 4.63597 4.89320 5.15261 5.33992 5.38728 5.56132 5.62453 5.69068 5.81323 5.90226 5.99838 6.03191 6.33109 6.42553 6.45902 6.70212 7.15000 7.93314 8.38022 9.42141 9.97900 11.14852 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.086342 B = 0.010915 C = 0.010288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.213460 B = 2564.551140 C = 2720.989641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.490 5.490 3 C 0.007 3.993 4 C -0.110 4.110 5 C 0.092 3.908 6 O -0.332 6.332 7 C -0.358 4.358 8 H 0.077 0.923 9 C 0.043 3.957 10 N -0.915 5.915 11 Si 0.908 3.092 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.264 1.264 15 C 0.009 3.991 16 H 0.034 0.966 17 H 0.067 0.933 18 H 0.064 0.936 19 H 0.088 0.912 20 H 0.069 0.931 21 H 0.103 0.897 22 H 0.029 0.971 23 H 0.033 0.967 24 H 0.269 0.731 25 H 0.071 0.929 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.232 -3.743 10.018 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.212 5.212 3 C -0.121 4.121 4 C -0.129 4.129 5 C 0.014 3.986 6 O -0.248 6.248 7 C -0.436 4.436 8 H 0.095 0.905 9 C -0.154 4.154 10 N -0.560 5.560 11 Si 0.735 3.265 12 H -0.208 1.208 13 H -0.218 1.218 14 H -0.188 1.188 15 C -0.119 4.119 16 H 0.052 0.948 17 H 0.086 0.914 18 H 0.083 0.917 19 H 0.106 0.894 20 H 0.087 0.913 21 H 0.122 0.878 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.902 -4.383 10.486 13.842 hybrid contribution -0.117 0.109 -0.685 0.703 sum -8.019 -4.274 9.801 13.365 Atomic orbital electron populations 1.22841 0.90207 1.02087 1.00807 1.68502 1.08581 1.18652 1.25479 1.23940 0.97032 0.91304 0.99864 1.22949 0.98307 0.96106 0.95566 1.22038 0.91315 0.94835 0.90386 1.85222 1.52525 1.48403 1.38611 1.20379 1.18703 1.03757 1.00774 0.90497 1.24322 0.97095 0.98853 0.95114 1.69689 1.32569 1.38747 1.15024 0.86139 0.77996 0.83111 0.79214 1.20765 1.21766 1.18850 1.24091 0.96953 1.00874 0.90007 0.94761 0.91414 0.91686 0.89402 0.91297 0.87832 0.95338 0.94910 0.92137 0.91048 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.65 60.06 0.58 0.46 15 2 N -0.49 -7.06 6.56 -245.65 -1.61 -8.67 15 3 C 0.01 0.10 7.55 -2.77 -0.02 0.08 15 4 C -0.11 -1.90 4.19 -89.68 -0.38 -2.28 15 5 C 0.09 1.93 5.87 37.16 0.22 2.15 15 6 O -0.33 -8.87 8.61 -16.50 -0.14 -9.02 15 7 C -0.36 -10.74 10.35 30.88 0.32 -10.42 15 8 H 0.08 2.40 8.00 -52.49 -0.42 1.98 15 9 C 0.04 1.30 5.49 -17.51 -0.10 1.21 15 10 N -0.91 -28.72 13.96 55.48 0.77 -27.95 15 11 Si 0.91 23.53 28.62 -169.99 -4.86 18.67 15 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 15 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 14 H -0.26 -6.81 7.11 56.52 0.40 -6.41 15 15 C 0.01 0.14 7.54 -2.65 -0.02 0.12 15 16 H 0.03 0.39 7.62 -51.93 -0.40 -0.01 15 17 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 18 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 20 H 0.07 0.89 7.88 -51.93 -0.41 0.48 15 21 H 0.10 1.86 8.14 -51.93 -0.42 1.43 15 22 H 0.03 0.58 7.84 -51.93 -0.41 0.18 15 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.27 7.88 8.31 -40.82 -0.34 7.54 15 25 H 0.07 1.10 7.37 -51.93 -0.38 0.72 15 26 H 0.09 1.40 8.14 -51.93 -0.42 0.97 15 LS Contribution 225.59 15.07 3.40 3.40 Total: -1.00 -32.02 225.59 -5.53 -37.54 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -3.69 Total: -5.30 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 0.60 Total: -8.67 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.84 Total: -36.62 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.14 Total: -9.02 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.86 Total: 18.67 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.02 -5.53 -37.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049833.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.099 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds