Wall clock time and date at job start Mon Mar 30 2020 01:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46896 * 113.73225 * 138.02731 * 4 3 2 6 6 C 1.46904 * 111.00342 * 154.99516 * 5 4 3 7 7 C 1.50697 * 109.47378 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99931 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99830 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00115 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47081 * 90.00161 * 11 9 7 13 13 H 1.48497 * 109.47437 * 210.00312 * 11 9 7 14 14 H 1.48509 * 109.47201 * 330.00693 * 11 9 7 15 15 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 16 16 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 17 17 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 19 19 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 20 20 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 21 21 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 22 22 H 1.00896 * 111.00158 * 278.94560 * 5 4 3 23 23 H 1.08993 * 109.47076 * 300.00432 * 6 5 4 24 24 H 1.09009 * 109.46771 * 59.99912 * 6 5 4 25 25 H 0.96998 * 119.99528 * 179.97438 * 10 9 7 26 26 H 1.09005 * 113.65869 * 23.13541 * 15 2 1 27 27 H 1.09002 * 113.92722 * 251.82174 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2491 1.8230 -2.1425 6 6 4.5751 1.6206 -2.7414 7 6 4.7718 2.6004 -3.8694 8 1 3.9898 3.3029 -4.1169 9 6 5.9498 2.5992 -4.5860 10 7 6.1216 3.4547 -5.5700 11 14 7.3021 1.3836 -4.1583 12 1 7.1133 0.1370 -4.9428 13 1 8.6233 1.9782 -4.4840 14 1 7.2446 1.0692 -2.7080 15 6 2.0019 -0.2232 -1.3646 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 2.4459 1.6803 0.9483 20 1 1.3003 2.1201 -0.3924 21 1 3.9474 0.5117 -0.5975 22 1 2.5226 1.7458 -2.8384 23 1 5.3435 1.7781 -1.9846 24 1 4.6482 0.6036 -3.1271 25 1 6.9504 3.4541 -6.0739 26 1 1.3025 0.0447 -2.1566 27 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260057178.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:46 Heat of formation + Delta-G solvation = 36.480864 kcal Electronic energy + Delta-G solvation = -9735.371693 eV Core-core repulsion = 7915.253553 eV Total energy + Delta-G solvation = -1820.118140 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.61960 -34.56098 -32.24466 -29.55626 -26.64787 -25.86206 -22.85782 -21.15486 -19.61288 -16.82002 -15.71344 -15.39136 -14.73130 -14.44523 -13.65409 -13.02229 -12.61412 -12.50588 -12.14217 -11.92434 -11.51970 -10.91671 -10.81732 -10.54064 -10.19184 -9.79156 -9.29513 -8.75499 -8.61621 -7.52621 -6.07675 -4.06100 3.27949 3.35695 3.38569 4.10716 4.40878 4.79130 4.93178 5.17807 5.24877 5.37485 5.47195 5.64587 5.68929 5.81738 5.86946 6.02231 6.30543 6.39835 6.74729 6.98387 7.15291 7.57823 7.85707 8.26065 8.61671 8.99611 9.54027 11.05604 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095839 B = 0.010101 C = 0.009628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.087991 B = 2771.244594 C = 2907.408243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.489 5.489 3 C 0.008 3.992 4 C 0.064 3.936 5 N -0.669 5.669 6 C 0.163 3.837 7 C -0.519 4.519 8 H 0.078 0.922 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.879 3.121 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.266 1.266 15 C -0.030 4.030 16 H 0.033 0.967 17 H 0.065 0.935 18 H 0.065 0.935 19 H 0.085 0.915 20 H 0.073 0.927 21 H 0.098 0.902 22 H 0.337 0.663 23 H 0.028 0.972 24 H -0.018 1.018 25 H 0.264 0.736 26 H 0.070 0.930 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.334 -6.778 8.486 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.212 5.212 3 C -0.122 4.122 4 C -0.049 4.049 5 N -0.298 5.298 6 C 0.036 3.964 7 C -0.557 4.557 8 H 0.096 0.904 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.706 3.294 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.191 1.191 15 C -0.160 4.160 16 H 0.052 0.948 17 H 0.084 0.916 18 H 0.084 0.916 19 H 0.104 0.896 20 H 0.091 0.909 21 H 0.116 0.884 22 H 0.156 0.844 23 H 0.046 0.954 24 H -0.001 1.001 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.826 -6.643 9.280 13.298 hybrid contribution 0.215 -0.906 -1.017 1.379 sum -6.611 -7.549 8.264 12.999 Atomic orbital electron populations 1.22816 0.90158 1.01843 1.00901 1.68429 1.08582 1.19678 1.24462 1.24150 0.97389 0.90521 1.00134 1.23418 0.96984 0.90387 0.94064 1.60419 1.06179 1.50515 1.12717 1.20060 0.86619 0.94903 0.94848 1.21066 1.02997 1.18132 1.13501 0.90350 1.24911 0.98154 0.95576 0.94673 1.69902 1.26413 1.36464 1.21116 0.86802 0.81686 0.81518 0.79363 1.20317 1.21128 1.19102 1.24844 0.98519 1.01708 0.90978 0.94787 0.91638 0.91633 0.89649 0.90922 0.88402 0.84446 0.95407 1.00072 0.92612 0.91163 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.06 0.58 0.49 15 2 N -0.49 -7.01 6.56 -245.78 -1.61 -8.62 15 3 C 0.01 0.11 7.78 -2.77 -0.02 0.09 15 4 C 0.06 1.09 4.37 -69.11 -0.30 0.79 15 5 N -0.67 -13.77 6.62 -108.98 -0.72 -14.49 15 6 C 0.16 3.97 4.35 -4.98 -0.02 3.94 15 7 C -0.52 -14.87 9.87 -34.44 -0.34 -15.21 15 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 15 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 10 N -0.90 -27.71 13.96 55.43 0.77 -26.93 15 11 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 15 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 14 H -0.27 -6.32 6.54 56.52 0.37 -5.95 15 15 C -0.03 -0.44 7.60 -2.65 -0.02 -0.46 15 16 H 0.03 0.39 7.62 -51.93 -0.40 0.00 15 17 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 18 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 19 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 20 H 0.07 1.06 7.92 -51.93 -0.41 0.65 15 21 H 0.10 1.72 7.87 -51.93 -0.41 1.31 15 22 H 0.34 6.68 8.18 -39.29 -0.32 6.36 15 23 H 0.03 0.69 7.19 -51.93 -0.37 0.32 15 24 H -0.02 -0.44 7.57 -51.92 -0.39 -0.83 15 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 26 H 0.07 1.00 7.29 -51.93 -0.38 0.63 15 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 227.04 15.07 3.42 3.42 Total: -1.00 -30.12 227.04 -6.99 -37.12 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -3.96 Total: 1.04 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.22 Total: -8.46 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -1.56 Total: -50.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.12 -6.99 -37.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057178.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.596 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds