Wall clock time and date at job start Mon Mar 30 2020 01:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46896 * 113.73225 * 138.02731 * 4 3 2 6 6 C 1.46904 * 111.00342 * 154.99516 * 5 4 3 7 7 C 1.50697 * 109.47378 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99931 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99830 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00115 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47081 * 90.00161 * 11 9 7 13 13 H 1.48497 * 109.47437 * 210.00312 * 11 9 7 14 14 H 1.48509 * 109.47201 * 330.00693 * 11 9 7 15 15 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 16 16 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 17 17 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 19 19 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 20 20 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 21 21 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 22 22 H 1.00896 * 111.00158 * 278.94560 * 5 4 3 23 23 H 1.08993 * 109.47076 * 300.00432 * 6 5 4 24 24 H 1.09009 * 109.46771 * 59.99912 * 6 5 4 25 25 H 0.96998 * 119.99528 * 179.97438 * 10 9 7 26 26 H 1.09005 * 113.65869 * 23.13541 * 15 2 1 27 27 H 1.09002 * 113.92722 * 251.82174 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2491 1.8230 -2.1425 6 6 4.5751 1.6206 -2.7414 7 6 4.7718 2.6004 -3.8694 8 1 3.9898 3.3029 -4.1169 9 6 5.9498 2.5992 -4.5860 10 7 6.1216 3.4547 -5.5700 11 14 7.3021 1.3836 -4.1583 12 1 7.1133 0.1370 -4.9428 13 1 8.6233 1.9782 -4.4840 14 1 7.2446 1.0692 -2.7080 15 6 2.0019 -0.2232 -1.3646 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 2.4459 1.6803 0.9483 20 1 1.3003 2.1201 -0.3924 21 1 3.9474 0.5117 -0.5975 22 1 2.5226 1.7458 -2.8384 23 1 5.3435 1.7781 -1.9846 24 1 4.6482 0.6036 -3.1271 25 1 6.9504 3.4541 -6.0739 26 1 1.3025 0.0447 -2.1566 27 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057178.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:46 Heat of formation + Delta-G solvation = 11.466096 kcal Electronic energy + Delta-G solvation = -9736.456414 eV Core-core repulsion = 7915.253553 eV Total energy + Delta-G solvation = -1821.202861 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.83498 -36.30279 -34.29269 -30.95889 -28.43081 -27.03114 -24.25129 -22.98601 -20.92470 -18.90152 -17.07184 -16.77873 -16.27281 -15.92301 -15.28237 -14.65301 -14.29216 -13.75840 -13.67719 -13.52040 -12.87136 -12.59704 -12.36892 -11.91133 -11.81496 -11.63946 -11.31922 -10.82357 -9.88093 -9.14177 -8.30767 -6.35739 1.35639 1.37949 1.49226 2.34305 2.94433 3.03587 3.42841 3.69548 4.05248 4.18789 4.34278 4.49592 4.57146 4.69742 4.77384 4.86677 4.94823 5.01423 5.11120 5.31230 5.51515 5.94863 6.05159 6.53036 6.62019 6.74223 7.29598 8.85996 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095839 B = 0.010101 C = 0.009628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.087991 B = 2771.244594 C = 2907.408243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.493 5.493 3 C 0.015 3.985 4 C 0.051 3.949 5 N -0.677 5.677 6 C 0.175 3.825 7 C -0.531 4.531 8 H 0.037 0.963 9 C 0.008 3.992 10 N -0.948 5.948 11 Si 0.953 3.047 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.250 1.250 15 C -0.022 4.022 16 H 0.036 0.964 17 H 0.077 0.923 18 H 0.077 0.923 19 H 0.094 0.906 20 H 0.074 0.926 21 H 0.094 0.906 22 H 0.339 0.661 23 H 0.026 0.974 24 H -0.011 1.011 25 H 0.268 0.732 26 H 0.076 0.924 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 -8.406 9.774 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.216 5.216 3 C -0.114 4.114 4 C -0.060 4.060 5 N -0.307 5.307 6 C 0.046 3.954 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.189 4.189 10 N -0.588 5.588 11 Si 0.776 3.224 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.174 1.174 15 C -0.153 4.153 16 H 0.054 0.946 17 H 0.096 0.904 18 H 0.096 0.904 19 H 0.112 0.888 20 H 0.092 0.908 21 H 0.112 0.888 22 H 0.157 0.843 23 H 0.044 0.956 24 H 0.007 0.993 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.896 -8.281 10.591 15.110 hybrid contribution 0.124 -0.342 -1.415 1.461 sum -6.772 -8.622 9.177 14.298 Atomic orbital electron populations 1.22887 0.88403 1.02913 1.01636 1.68431 1.10382 1.18973 1.23840 1.24093 0.96606 0.91047 0.99657 1.23555 0.97884 0.91124 0.93430 1.60330 1.04613 1.52484 1.13279 1.19792 0.88604 0.93708 0.93247 1.21357 1.02181 1.18326 1.15088 0.94477 1.25892 1.01034 0.97661 0.94340 1.70054 1.27511 1.38658 1.22571 0.85634 0.77856 0.78897 0.80034 1.19009 1.20668 1.17371 1.24770 0.97781 1.01065 0.91634 0.94567 0.90439 0.90404 0.88803 0.90775 0.88831 0.84259 0.95641 0.99317 0.92307 0.90625 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 9.65 127.69 1.23 1.04 15 2 N -0.49 -12.84 6.56 -931.52 -6.11 -18.95 15 3 C 0.02 0.42 7.78 86.41 0.67 1.10 15 4 C 0.05 1.67 4.37 46.37 0.20 1.87 15 5 N -0.68 -27.39 6.62 -498.70 -3.30 -30.69 15 6 C 0.18 8.35 4.35 85.56 0.37 8.72 15 7 C -0.53 -30.92 9.87 25.60 0.25 -30.67 15 8 H 0.04 2.39 8.06 -2.91 -0.02 2.37 15 9 C 0.01 0.49 5.47 84.66 0.46 0.95 15 10 N -0.95 -59.38 13.96 21.45 0.30 -59.09 15 11 Si 0.95 44.00 27.47 68.60 1.88 45.89 15 12 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 14 H -0.25 -10.81 6.54 99.48 0.65 -10.16 15 15 C -0.02 -0.60 7.60 86.36 0.66 0.05 15 16 H 0.04 0.74 7.62 -2.39 -0.02 0.72 15 17 H 0.08 1.43 8.14 -2.38 -0.02 1.41 15 18 H 0.08 1.43 8.14 -2.39 -0.02 1.41 15 19 H 0.09 2.43 8.14 -2.39 -0.02 2.41 15 20 H 0.07 2.03 7.92 -2.38 -0.02 2.01 15 21 H 0.09 3.12 7.87 -2.38 -0.02 3.10 15 22 H 0.34 13.33 8.18 -89.70 -0.73 12.59 15 23 H 0.03 1.23 7.19 -2.39 -0.02 1.21 15 24 H -0.01 -0.50 7.57 -2.38 -0.02 -0.52 15 25 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 26 H 0.08 2.00 7.29 -2.38 -0.02 1.98 15 27 H 0.09 2.35 8.14 -2.39 -0.02 2.33 15 Total: -1.00 -64.04 227.04 -3.03 -67.07 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.35 Total: 12.71 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.85 Total: -16.94 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -9.12 Total: -108.73 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.89 kcal Total: -64.04 -3.03 -67.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057178.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.539 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds