Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00171 * 2 1 4 4 H 1.08003 * 119.99810 * 332.30200 * 3 2 1 5 5 C 1.38810 * 120.00108 * 152.30871 * 3 2 1 6 6 N 1.31618 * 120.00060 * 156.03910 * 5 3 2 7 7 Si 1.86801 * 120.00174 * 336.03222 * 5 3 2 8 8 H 1.48498 * 109.46860 * 95.42934 * 7 5 3 9 9 H 1.48497 * 109.47128 * 215.43266 * 7 5 3 10 10 H 1.48504 * 109.46827 * 335.43442 * 7 5 3 11 11 C 1.46497 * 119.99794 * 179.97438 * 2 1 3 12 12 C 1.53934 * 113.73612 * 60.00245 * 11 2 1 13 13 N 1.47960 * 86.29803 * 269.19957 * 12 11 2 14 14 C 1.46909 * 110.99834 * 222.46731 * 13 12 11 15 15 C 1.48175 * 90.67411 * 335.40518 * 13 12 11 16 16 H 1.09002 * 109.46901 * 268.24736 * 1 2 3 17 17 H 1.08991 * 109.47005 * 28.24299 * 1 2 3 18 18 H 1.08988 * 109.47018 * 148.24829 * 1 2 3 19 19 H 0.97002 * 120.00434 * 180.02562 * 6 5 3 20 20 H 1.09005 * 112.93660 * 191.56383 * 11 2 1 21 21 H 1.09001 * 113.75728 * 23.56721 * 12 11 2 22 22 H 1.08994 * 113.76336 * 154.82623 * 12 11 2 23 23 H 1.09001 * 109.46613 * 60.00342 * 14 13 12 24 24 H 1.08994 * 109.47057 * 179.97438 * 14 13 12 25 25 H 1.09001 * 109.46994 * 300.00126 * 14 13 12 26 26 H 1.09003 * 113.66175 * 270.26467 * 15 13 12 27 27 H 1.09005 * 113.92052 * 138.95856 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7025 2.0676 -0.4348 5 6 3.4186 1.2547 0.5586 6 7 4.2582 2.1916 0.1716 7 14 3.9346 0.0178 1.8599 8 1 4.6745 -1.0976 1.2168 9 1 4.8114 0.6841 2.8561 10 1 2.7280 -0.5164 2.5411 11 6 2.1975 -1.2687 0.0006 12 6 1.8971 -2.1581 -1.2194 13 7 0.8215 -2.7561 -0.3981 14 6 0.7882 -4.2163 -0.5564 15 6 1.5317 -2.3709 0.8440 16 1 -0.3633 -0.0314 1.0272 17 1 -0.3633 0.9053 -0.4863 18 1 -0.3633 -0.8738 -0.5407 19 1 5.1450 2.2395 0.5616 20 1 3.2616 -1.1448 0.2017 21 1 1.5327 -1.6064 -2.0860 22 1 2.7002 -2.8530 -1.4647 23 1 1.7431 -4.6376 -0.2422 24 1 -0.0110 -4.6303 0.0583 25 1 0.6082 -4.4643 -1.6025 26 1 2.2272 -3.1294 1.2035 27 1 0.8768 -1.9892 1.6274 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260070074.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = 50.812346 kcal Electronic energy + Delta-G solvation = -10405.170231 eV Core-core repulsion = 8585.673551 eV Total energy + Delta-G solvation = -1819.496680 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.01287 -36.44751 -33.58442 -30.65754 -28.22261 -27.02149 -25.29721 -23.31575 -20.89045 -18.56268 -17.73956 -16.59760 -16.02705 -15.75297 -15.34091 -14.62080 -14.39614 -13.80642 -13.32385 -13.19489 -12.87152 -12.74010 -12.29786 -12.18325 -11.85966 -11.61633 -11.31321 -10.66032 -9.68338 -8.92455 -8.19784 -5.49654 1.26170 1.41566 1.52573 2.40554 2.88218 3.09076 3.35696 3.82213 4.02466 4.19929 4.41797 4.48513 4.63928 4.65874 4.85538 4.91236 4.98677 5.08020 5.10824 5.27429 5.38162 5.86734 6.10143 6.17834 6.92938 7.63332 8.02478 8.99921 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.059696 B = 0.019387 C = 0.016993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.927945 B = 1443.926066 C = 1647.330322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.599 5.599 3 C -0.262 4.262 4 H 0.051 0.949 5 C -0.032 4.032 6 N -0.951 5.951 7 Si 0.944 3.056 8 H -0.272 1.272 9 H -0.310 1.310 10 H -0.253 1.253 11 C 0.120 3.880 12 C -0.015 4.015 13 N -0.481 5.481 14 C -0.011 4.011 15 C -0.014 4.014 16 H 0.010 0.990 17 H 0.032 0.968 18 H 0.077 0.923 19 H 0.263 0.737 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.039 0.961 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 -12.956 0.585 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.321 5.321 3 C -0.392 4.392 4 H 0.068 0.932 5 C -0.228 4.228 6 N -0.596 5.596 7 Si 0.772 3.228 8 H -0.199 1.199 9 H -0.239 1.239 10 H -0.176 1.176 11 C 0.011 3.989 12 C -0.146 4.146 13 N -0.204 5.204 14 C -0.160 4.160 15 C -0.145 4.145 16 H 0.028 0.972 17 H 0.050 0.950 18 H 0.095 0.905 19 H 0.072 0.928 20 H 0.078 0.922 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.459 -12.685 0.496 13.819 hybrid contribution 1.360 -0.306 0.644 1.535 sum -4.099 -12.991 1.139 13.670 Atomic orbital electron populations 1.21175 0.81676 1.00602 0.98341 1.43891 1.02444 1.00345 1.85379 1.18903 0.99107 0.89212 1.31963 0.93163 1.25929 0.96614 0.99485 1.00732 1.70011 1.06781 1.38786 1.44057 0.85909 0.78128 0.78553 0.80164 1.19905 1.23935 1.17646 1.22199 0.95021 0.85852 0.95808 1.24592 0.93950 0.97501 0.98561 1.68435 1.37022 1.11481 1.03481 1.22926 1.01423 0.88554 1.03075 1.24611 0.97267 0.97568 0.95037 0.97174 0.94963 0.90477 0.92812 0.92194 0.90293 0.89971 0.94212 0.90400 0.90574 0.89729 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.27 9.64 127.77 1.23 6.51 15 2 N -0.60 -29.36 2.87 -706.20 -2.03 -31.39 15 3 C -0.26 -15.37 10.00 84.03 0.84 -14.53 15 4 H 0.05 3.22 8.06 -2.91 -0.02 3.20 15 5 C -0.03 -1.91 5.28 84.86 0.45 -1.46 15 6 N -0.95 -60.36 13.97 21.65 0.30 -60.06 15 7 Si 0.94 46.24 24.48 68.60 1.68 47.92 15 8 H -0.27 -12.42 6.57 99.48 0.65 -11.77 15 9 H -0.31 -15.45 7.11 99.48 0.71 -14.75 15 10 H -0.25 -11.70 6.75 99.48 0.67 -11.03 15 11 C 0.12 5.12 2.86 46.45 0.13 5.25 15 12 C -0.01 -0.52 7.44 86.41 0.64 0.13 15 13 N -0.48 -15.31 4.74 -931.61 -4.42 -19.73 15 14 C -0.01 -0.26 9.65 127.69 1.23 0.97 15 15 C -0.01 -0.50 6.58 86.36 0.57 0.07 15 16 H 0.01 0.41 8.13 -2.39 -0.02 0.39 15 17 H 0.03 1.34 8.02 -2.39 -0.02 1.32 15 18 H 0.08 2.92 6.15 -2.39 -0.01 2.90 15 19 H 0.26 15.75 8.31 -92.71 -0.77 14.98 15 20 H 0.06 2.81 3.46 -2.38 -0.01 2.81 15 21 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 22 H 0.08 2.49 7.92 -2.39 -0.02 2.48 15 23 H 0.04 0.86 7.62 -2.39 -0.02 0.84 15 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 26 H 0.08 2.54 7.62 -2.39 -0.02 2.52 15 27 H 0.08 2.96 7.82 -2.38 -0.02 2.94 15 Total: -1.00 -65.07 215.48 1.67 -63.39 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.04 Total: 2.94 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.10 Total: -3.07 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -6.15 Total: -111.19 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.68 Total: 47.92 kcal Total: -65.07 1.67 -63.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070074.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.206 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds