Wall clock time and date at job start Mon Mar 30 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.41613 * 59.86081 * 9 7 2 11 11 O 1.42971 * 109.41038 * 300.00144 * 9 7 2 12 12 C 1.43243 * 112.98334 * 190.29897 * 11 9 7 13 13 C 1.53020 * 108.67236 * 68.36083 * 12 11 9 14 14 N 1.46088 * 109.92659 * 310.83989 * 13 12 11 15 15 C 1.33866 * 122.53965 * 18.35123 * 14 13 12 16 16 O 1.21286 * 118.83742 * 178.11928 * 15 14 13 17 17 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 18 18 H 1.09004 * 109.60064 * 188.11704 * 12 11 9 19 19 H 1.09002 * 109.60729 * 308.44043 * 12 11 9 20 20 H 1.09006 * 109.39588 * 70.97868 * 13 12 11 21 21 H 1.09005 * 109.39736 * 190.78522 * 13 12 11 22 22 H 0.96998 * 118.73238 * 198.38289 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6232 -2.5543 -0.8910 11 8 0.4291 -2.5743 1.1657 12 6 -0.1407 -3.8732 1.3659 13 6 0.9811 -4.8503 1.7244 14 7 2.0808 -4.7169 0.7720 15 6 2.2291 -3.6410 -0.0105 16 8 3.1865 -3.5851 -0.7530 17 1 -0.4849 0.8401 0.0004 18 1 -0.8649 -3.8334 2.1796 19 1 -0.6356 -4.2004 0.4515 20 1 1.3438 -4.6322 2.7289 21 1 0.5972 -5.8700 1.6917 22 1 2.7282 -5.4359 0.7036 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260091403.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:56 Heat of formation + Delta-G solvation = -107.139113 kcal Electronic energy + Delta-G solvation = -10134.223738 eV Core-core repulsion = 8074.326012 eV Total energy + Delta-G solvation = -2059.897726 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.14686 -38.24109 -35.82561 -34.46101 -30.97141 -28.94706 -25.76127 -24.24454 -20.49540 -19.14171 -18.16416 -18.00624 -16.62829 -16.21656 -15.83406 -15.15632 -15.03976 -14.34020 -13.91949 -13.29750 -12.82795 -12.75855 -12.20609 -12.07112 -11.77395 -11.02099 -10.73056 -10.06639 -9.91775 -8.26338 -6.47007 1.40699 1.44742 1.52318 1.67491 2.32602 2.43518 2.94096 3.55602 3.83390 4.06101 4.34945 4.52339 4.79080 4.85312 5.02439 5.58621 5.64053 6.00423 6.25349 6.51826 6.82794 7.24892 7.32158 8.82685 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.065626 B = 0.017443 C = 0.014708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.555782 B = 1604.806317 C = 1903.235419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.031 3.969 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.210 3.790 10 H 0.023 0.977 11 O -0.380 6.380 12 C 0.019 3.981 13 C 0.084 3.916 14 N -0.718 5.718 15 C 0.495 3.505 16 O -0.593 6.593 17 H 0.270 0.730 18 H 0.126 0.874 19 H 0.047 0.953 20 H 0.079 0.921 21 H 0.123 0.877 22 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 -7.397 4.589 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.172 4.172 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.074 0.926 9 C 0.152 3.848 10 H 0.041 0.959 11 O -0.298 6.298 12 C -0.059 4.059 13 C -0.039 4.039 14 N -0.372 5.372 15 C 0.283 3.717 16 O -0.474 6.474 17 H 0.079 0.921 18 H 0.143 0.857 19 H 0.065 0.935 20 H 0.097 0.903 21 H 0.141 0.859 22 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.341 -6.948 4.368 8.316 hybrid contribution 0.540 0.189 -0.276 0.636 sum -0.801 -6.759 4.092 7.942 Atomic orbital electron populations 1.70114 1.07326 1.28305 1.46784 1.25891 0.95901 1.02950 0.92501 0.85416 0.78413 0.77511 0.79111 1.19489 1.19409 1.19321 1.20949 0.92705 0.90059 1.55007 0.92560 1.19573 0.86986 0.91716 0.86570 0.95945 1.88554 1.65531 1.29926 1.45839 1.23150 0.95675 0.84755 1.02286 1.22315 0.87008 1.02149 0.92456 1.45600 1.30964 1.19969 1.40653 1.21710 0.86898 0.84347 0.78775 1.90563 1.33159 1.80686 1.43001 0.92129 0.85663 0.93475 0.90287 0.85858 0.76108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.63 12.84 21.45 0.28 -52.36 14 2 C 0.03 1.82 5.40 84.65 0.46 2.28 14 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 14 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 14 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 14 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 14 7 C -0.55 -33.35 8.52 25.60 0.22 -33.13 14 8 H 0.06 3.51 7.44 -2.91 -0.02 3.49 14 9 C 0.21 11.61 2.75 28.99 0.08 11.69 14 10 H 0.02 1.37 8.14 -2.39 -0.02 1.35 14 11 O -0.38 -19.19 9.88 -148.98 -1.47 -20.67 14 12 C 0.02 0.64 6.89 71.99 0.50 1.14 14 13 C 0.08 2.29 7.43 86.46 0.64 2.93 14 14 N -0.72 -25.61 5.54 -465.54 -2.58 -28.19 14 15 C 0.49 24.31 7.36 87.69 0.65 24.95 14 16 O -0.59 -32.92 17.11 -3.05 -0.05 -32.97 14 17 H 0.27 14.83 8.31 -92.71 -0.77 14.06 14 18 H 0.13 3.43 8.14 -2.39 -0.02 3.41 14 19 H 0.05 1.58 8.10 -2.39 -0.02 1.56 14 20 H 0.08 2.00 8.14 -2.38 -0.02 1.98 14 21 H 0.12 2.14 8.14 -2.38 -0.02 2.12 14 22 H 0.40 12.01 8.86 -92.71 -0.82 11.19 14 Total: -1.00 -73.23 199.84 1.15 -72.08 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.41 Total: 5.21 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 2.54 Total: 9.86 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.30 Total: -80.55 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -1.52 Total: -53.64 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.23 1.15 -72.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260091403.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.060 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds