Wall clock time and date at job start Mon Mar 30 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 C 1.53005 * 113.73242 * 138.02883 * 4 3 2 6 6 N 1.46501 * 109.46993 * 174.99933 * 5 4 3 7 7 C 1.36935 * 119.99816 * 179.97438 * 6 5 4 8 8 H 1.08006 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00275 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99550 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00269 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47505 * 59.99950 * 11 9 7 13 13 H 1.48510 * 109.47260 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47302 * 299.99621 * 11 9 7 15 15 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 16 16 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 17 17 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 19 19 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 20 20 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 21 21 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 22 22 H 1.09004 * 109.46796 * 294.99318 * 5 4 3 23 23 H 1.08992 * 109.47543 * 54.99429 * 5 4 3 24 24 H 0.96996 * 119.99852 * 359.97438 * 6 5 4 25 25 H 0.96999 * 120.00106 * 179.97438 * 10 9 7 26 26 H 1.09005 * 113.65869 * 23.13541 * 15 2 1 27 27 H 1.09002 * 113.92722 * 251.82174 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 6 3.2586 1.8621 -2.1885 6 7 4.3274 1.3523 -3.0510 7 6 4.7156 2.0650 -4.1540 8 1 4.2336 3.0027 -4.3883 9 6 5.7287 1.5824 -4.9710 10 7 6.3166 0.4399 -4.6852 11 14 6.2578 2.5542 -6.4760 12 1 6.7435 3.8930 -6.0552 13 1 7.3494 1.8293 -7.1748 14 1 5.1016 2.7131 -7.3942 15 6 2.0019 -0.2232 -1.3646 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 2.4459 1.6803 0.9483 20 1 1.3003 2.1201 -0.3924 21 1 3.9474 0.5117 -0.5975 22 1 2.3424 1.9684 -2.7695 23 1 3.5482 2.8326 -1.7860 24 1 4.7601 0.5101 -2.8408 25 1 7.0242 0.1024 -5.2563 26 1 1.3025 0.0447 -2.1566 27 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125727.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:43 Heat of formation + Delta-G solvation = 43.269406 kcal Electronic energy + Delta-G solvation = -9731.967992 eV Core-core repulsion = 7912.144226 eV Total energy + Delta-G solvation = -1819.823766 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.58399 -34.51930 -31.65522 -29.65644 -26.03759 -25.81176 -23.16991 -21.33605 -19.32425 -17.02813 -15.66244 -15.04498 -14.71070 -14.35242 -13.43261 -13.03185 -12.81817 -12.48902 -12.16491 -11.32483 -11.03002 -10.81142 -10.58179 -10.38748 -10.21873 -9.99783 -9.65723 -8.85940 -8.60822 -6.89070 -5.73606 -3.02328 3.45863 3.49862 3.51230 4.18428 4.59246 4.85601 5.06343 5.22759 5.44948 5.60738 5.65317 5.71262 5.84845 5.90225 6.08028 6.10953 6.25376 6.39979 6.47599 6.75639 6.91252 7.23694 7.71366 8.45385 9.56269 10.14872 10.49988 11.49291 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.115344 B = 0.009252 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 242.694352 B = 3025.649524 C = 3089.470065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.491 5.491 3 C 0.006 3.994 4 C -0.118 4.118 5 C 0.161 3.839 6 N -0.731 5.731 7 C -0.241 4.241 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.011 3.989 16 H 0.033 0.967 17 H 0.066 0.934 18 H 0.063 0.937 19 H 0.084 0.916 20 H 0.068 0.932 21 H 0.099 0.901 22 H 0.017 0.983 23 H 0.021 0.979 24 H 0.385 0.615 25 H 0.256 0.744 26 H 0.070 0.930 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 0.655 7.153 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.213 5.213 3 C -0.124 4.124 4 C -0.137 4.137 5 C 0.033 3.967 6 N -0.375 5.375 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C -0.118 4.118 16 H 0.052 0.948 17 H 0.085 0.915 18 H 0.082 0.918 19 H 0.103 0.897 20 H 0.086 0.914 21 H 0.117 0.883 22 H 0.035 0.965 23 H 0.039 0.961 24 H 0.218 0.782 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.920 0.316 7.562 11.698 hybrid contribution 0.055 0.754 -1.436 1.622 sum -8.865 1.070 6.126 10.829 Atomic orbital electron populations 1.22832 0.90425 1.01964 1.00689 1.68504 1.08409 1.18830 1.25572 1.23943 0.97292 0.91134 0.99986 1.23151 0.97940 0.96371 0.96218 1.20668 0.91941 0.94419 0.89674 1.42341 1.40881 1.25941 1.28377 1.19202 1.14346 1.02520 1.01175 0.91300 1.24742 0.99229 0.97477 0.99525 1.69656 1.28030 1.20507 1.40045 0.86257 0.77914 0.79068 0.82878 1.21274 1.21669 1.21299 1.24066 0.97069 1.00770 0.89876 0.94845 0.91528 0.91803 0.89729 0.91424 0.88288 0.96514 0.96120 0.78186 0.93459 0.91192 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.65 60.06 0.58 0.46 15 2 N -0.49 -7.28 6.56 -245.65 -1.61 -8.89 15 3 C 0.01 0.08 7.55 -2.77 -0.02 0.06 15 4 C -0.12 -2.03 3.94 -89.68 -0.35 -2.38 15 5 C 0.16 3.34 6.11 -4.04 -0.02 3.31 15 6 N -0.73 -19.05 5.60 -59.91 -0.34 -19.39 15 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 15 8 H 0.07 1.91 7.83 -52.48 -0.41 1.49 15 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 15 10 N -0.93 -28.69 13.06 55.49 0.72 -27.97 15 11 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 15 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 15 C 0.01 0.17 7.54 -2.65 -0.02 0.15 15 16 H 0.03 0.40 7.62 -51.93 -0.40 0.00 15 17 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 18 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 19 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 20 H 0.07 0.91 7.88 -51.93 -0.41 0.50 15 21 H 0.10 1.79 8.14 -51.93 -0.42 1.37 15 22 H 0.02 0.35 7.84 -51.93 -0.41 -0.05 15 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 24 H 0.38 10.50 7.67 -40.82 -0.31 10.19 15 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 26 H 0.07 1.12 7.37 -51.93 -0.38 0.74 15 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 229.74 15.07 3.46 3.46 Total: -1.00 -30.57 229.74 -6.86 -37.43 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -3.99 Total: 3.67 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.09 Total: -5.95 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -1.22 Total: -56.25 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.57 -6.86 -37.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125727.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.696 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds