Wall clock time and date at job start Mon Mar 30 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 C 1.53005 * 113.73242 * 138.02883 * 4 3 2 6 6 N 1.46501 * 109.46993 * 174.99933 * 5 4 3 7 7 C 1.36935 * 119.99816 * 179.97438 * 6 5 4 8 8 H 1.08006 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00275 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99550 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00269 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47505 * 59.99950 * 11 9 7 13 13 H 1.48510 * 109.47260 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47302 * 299.99621 * 11 9 7 15 15 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 16 16 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 17 17 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 18 18 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 19 19 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 20 20 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 21 21 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 22 22 H 1.09004 * 109.46796 * 294.99318 * 5 4 3 23 23 H 1.08992 * 109.47543 * 54.99429 * 5 4 3 24 24 H 0.96996 * 119.99852 * 359.97438 * 6 5 4 25 25 H 0.96999 * 120.00106 * 179.97438 * 10 9 7 26 26 H 1.09005 * 113.65869 * 23.13541 * 15 2 1 27 27 H 1.09002 * 113.92722 * 251.82174 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 6 3.2586 1.8621 -2.1885 6 7 4.3274 1.3523 -3.0510 7 6 4.7156 2.0650 -4.1540 8 1 4.2336 3.0027 -4.3883 9 6 5.7287 1.5824 -4.9710 10 7 6.3166 0.4399 -4.6852 11 14 6.2578 2.5542 -6.4760 12 1 6.7435 3.8930 -6.0552 13 1 7.3494 1.8293 -7.1748 14 1 5.1016 2.7131 -7.3942 15 6 2.0019 -0.2232 -1.3646 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8899 19 1 2.4459 1.6803 0.9483 20 1 1.3003 2.1201 -0.3924 21 1 3.9474 0.5117 -0.5975 22 1 2.3424 1.9684 -2.7695 23 1 3.5482 2.8326 -1.7860 24 1 4.7601 0.5101 -2.8408 25 1 7.0242 0.1024 -5.2563 26 1 1.3025 0.0447 -2.1566 27 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125727.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:43 Heat of formation + Delta-G solvation = 19.982961 kcal Electronic energy + Delta-G solvation = -9732.977768 eV Core-core repulsion = 7912.144226 eV Total energy + Delta-G solvation = -1820.833542 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.83036 -36.45288 -33.51650 -31.21287 -27.68443 -27.03622 -24.99963 -22.83410 -20.69643 -19.07995 -17.05684 -16.57626 -16.20522 -15.84717 -15.07012 -14.81742 -14.48694 -13.66319 -13.53776 -13.07888 -12.75796 -12.34577 -12.27579 -11.97702 -11.90298 -11.54713 -11.45536 -10.91518 -9.78803 -9.00478 -7.95039 -5.24670 1.47582 1.51092 1.57322 2.56242 3.00665 3.36886 3.52281 3.78177 4.15676 4.24834 4.42409 4.51624 4.57236 4.63941 4.72681 4.83577 4.92219 4.99097 5.10640 5.34372 5.39010 5.49287 6.10183 6.27028 7.32965 8.08828 8.32628 9.28469 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.115344 B = 0.009252 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 242.694352 B = 3025.649524 C = 3089.470065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.499 5.499 3 C 0.019 3.981 4 C -0.121 4.121 5 C 0.162 3.838 6 N -0.745 5.745 7 C -0.251 4.251 8 H 0.076 0.924 9 C -0.075 4.075 10 N -0.970 5.970 11 Si 0.977 3.023 12 H -0.277 1.277 13 H -0.294 1.294 14 H -0.277 1.277 15 C 0.012 3.988 16 H 0.037 0.963 17 H 0.073 0.927 18 H 0.081 0.919 19 H 0.099 0.901 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.021 0.979 23 H 0.024 0.976 24 H 0.374 0.626 25 H 0.252 0.748 26 H 0.071 0.929 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 1.540 7.443 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.222 5.222 3 C -0.110 4.110 4 C -0.140 4.140 5 C 0.035 3.965 6 N -0.388 5.388 7 C -0.383 4.383 8 H 0.094 0.906 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.805 3.195 12 H -0.203 1.203 13 H -0.221 1.221 14 H -0.203 1.203 15 C -0.117 4.117 16 H 0.055 0.945 17 H 0.092 0.908 18 H 0.100 0.900 19 H 0.117 0.883 20 H 0.100 0.900 21 H 0.104 0.896 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.206 0.794 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.035 1.229 7.876 12.816 hybrid contribution 0.329 0.486 -1.466 1.579 sum -9.706 1.714 6.410 11.757 Atomic orbital electron populations 1.22904 0.88513 1.02873 1.01723 1.68482 1.10384 1.19074 1.24213 1.23938 0.96185 0.91309 0.99560 1.23067 0.98435 0.96495 0.96025 1.20807 0.90338 0.95269 0.90066 1.42568 1.42043 1.25504 1.28677 1.19638 1.14104 1.02766 1.01782 0.90636 1.25606 0.99690 0.98662 1.02757 1.69822 1.28711 1.22268 1.41291 0.85172 0.77406 0.77740 0.79192 1.20294 1.22066 1.20278 1.24003 0.96830 0.99886 0.90952 0.94475 0.90805 0.90029 0.88273 0.90019 0.89586 0.96133 0.95857 0.79439 0.93921 0.91116 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.24 9.65 127.69 1.23 0.99 15 2 N -0.50 -13.74 6.56 -931.09 -6.11 -19.85 15 3 C 0.02 0.50 7.55 86.41 0.65 1.15 15 4 C -0.12 -4.07 3.94 -10.15 -0.04 -4.11 15 5 C 0.16 6.60 6.11 86.38 0.53 7.12 15 6 N -0.75 -39.00 5.60 -343.44 -1.92 -40.93 15 7 C -0.25 -14.33 9.99 84.03 0.84 -13.50 15 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 15 9 C -0.07 -4.37 5.50 84.86 0.47 -3.90 15 10 N -0.97 -60.35 13.06 21.65 0.28 -60.06 15 11 Si 0.98 46.47 29.55 68.60 2.03 48.49 15 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 15 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 15 C 0.01 0.37 7.54 86.36 0.65 1.03 15 16 H 0.04 0.78 7.62 -2.39 -0.02 0.76 15 17 H 0.07 1.48 8.14 -2.38 -0.02 1.47 15 18 H 0.08 1.48 8.14 -2.39 -0.02 1.46 15 19 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 20 H 0.08 1.93 7.88 -2.38 -0.02 1.91 15 21 H 0.09 3.12 8.14 -2.38 -0.02 3.10 15 22 H 0.02 0.84 7.84 -2.39 -0.02 0.82 15 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.37 20.83 7.67 -92.71 -0.71 20.12 15 25 H 0.25 15.16 8.31 -92.71 -0.77 14.39 15 26 H 0.07 2.19 7.37 -2.38 -0.02 2.17 15 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 Total: -1.00 -63.76 229.74 -0.97 -64.73 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.43 Total: 18.83 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 4.33 Total: -11.21 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -7.75 Total: -120.84 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -63.76 -0.97 -64.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125727.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.718 kcal (2) G-P(sol) polarization free energy of solvation -63.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds