Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00151 * 2 1 4 4 H 1.48503 * 109.47145 * 270.00103 * 3 2 1 5 5 H 1.48503 * 109.47396 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.47276 * 150.00218 * 3 2 1 7 7 C 1.37880 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99567 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00346 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47211 * 179.97438 * 11 10 9 13 13 C 1.53515 * 114.16965 * 185.00043 * 12 11 10 14 14 N 1.47481 * 87.93334 * 220.32733 * 13 12 11 15 15 C 1.47488 * 87.83530 * 27.00963 * 14 13 12 16 16 H 0.97006 * 119.99681 * 359.97438 * 1 2 3 17 17 H 1.08990 * 109.47359 * 60.00037 * 9 7 2 18 18 H 1.09005 * 109.47091 * 299.99567 * 9 7 2 19 19 H 1.08997 * 109.46915 * 59.99745 * 11 10 9 20 20 H 1.09000 * 109.47082 * 299.99658 * 11 10 9 21 21 H 1.09002 * 113.38857 * 318.07878 * 12 11 10 22 22 H 1.09004 * 113.47747 * 105.56637 * 13 12 11 23 23 H 1.08995 * 113.53124 * 335.10698 * 13 12 11 24 24 H 1.00901 * 110.99857 * 138.69928 * 14 13 12 25 25 H 1.08996 * 113.47304 * 87.75121 * 15 14 13 26 26 H 1.08997 * 113.47652 * 218.22256 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5414 -0.0022 11 6 5.4124 -2.6543 -0.0034 12 6 5.8068 -4.1325 -0.0039 13 6 7.3170 -4.3802 0.1169 14 7 7.1657 -5.4587 -0.8775 15 6 5.9950 -4.7325 -1.4043 16 1 -0.4850 0.8401 0.0004 17 1 3.8752 -0.6805 0.8887 18 1 3.8745 -0.6801 -0.8912 19 1 5.8158 -2.1712 0.8865 20 1 5.8144 -2.1704 -0.8935 21 1 5.1997 -4.7426 0.6650 22 1 7.6213 -4.7366 1.1011 23 1 7.9242 -3.5465 -0.2356 24 1 7.9260 -5.4483 -1.5407 25 1 6.2487 -3.9923 -2.1632 26 1 5.1790 -5.3874 -1.7094 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260206962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = -17.300988 kcal Electronic energy + Delta-G solvation = -9713.327321 eV Core-core repulsion = 7793.158363 eV Total energy + Delta-G solvation = -1920.168958 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.60038 -36.59659 -32.66545 -29.80434 -27.59219 -25.76660 -23.66837 -21.84523 -19.47081 -17.05801 -16.18829 -15.83914 -15.36417 -14.70465 -14.21458 -13.50427 -12.76144 -12.52225 -12.25298 -12.01408 -11.20042 -11.00742 -10.80652 -10.49863 -10.29004 -9.88207 -9.21142 -9.07406 -8.86016 -8.49513 -6.13100 -4.12388 3.23060 3.30141 3.31408 4.21933 4.29182 4.34120 4.69500 5.18060 5.20768 5.28478 5.49185 5.63807 5.67284 5.83807 5.89271 5.96885 6.08492 6.40464 6.57542 6.96851 7.17859 7.57339 7.99390 8.64469 8.98398 9.45926 10.99948 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.100938 B = 0.009270 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.330858 B = 3019.890884 C = 3179.056375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.379 6.379 11 C 0.068 3.932 12 C -0.109 4.109 13 C 0.006 3.994 14 N -0.631 5.631 15 C 0.006 3.994 16 H 0.267 0.733 17 H 0.003 0.997 18 H -0.002 1.002 19 H 0.042 0.958 20 H 0.038 0.962 21 H 0.110 0.890 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.316 0.684 25 H 0.066 0.934 26 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.658 -3.995 -1.240 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.298 6.298 11 C -0.010 4.010 12 C -0.128 4.128 13 C -0.124 4.124 14 N -0.255 5.255 15 C -0.124 4.124 16 H 0.077 0.923 17 H 0.021 0.979 18 H 0.016 0.984 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.128 0.872 22 H 0.103 0.897 23 H 0.083 0.917 24 H 0.128 0.872 25 H 0.084 0.916 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.088 -4.768 -0.833 13.954 hybrid contribution 0.919 2.045 -0.549 2.308 sum 14.007 -2.723 -1.382 14.335 Atomic orbital electron populations 1.69882 1.06059 1.27111 1.50279 1.24772 0.94812 0.98758 0.94614 0.86842 0.80342 0.83744 0.78764 1.19922 1.20725 1.19128 1.20900 0.88252 0.95379 1.51285 0.89913 1.20611 0.96235 0.79497 0.94340 1.87923 1.17305 1.29539 1.95019 1.22288 0.85111 0.94441 0.99174 1.22715 0.95588 0.96429 0.98032 1.23599 0.96485 0.93714 0.98647 1.67326 1.07470 1.37873 1.12855 1.23668 0.95110 0.96849 0.96751 0.92333 0.97897 0.98435 0.93966 0.94395 0.87213 0.89707 0.91717 0.87220 0.91605 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.72 13.96 55.43 0.77 -26.94 15 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 15 7 C -0.52 -15.62 9.99 -34.44 -0.34 -15.96 15 8 H 0.08 2.71 8.06 -52.49 -0.42 2.29 15 9 C 0.17 4.32 4.76 36.00 0.17 4.49 15 10 O -0.38 -8.93 10.33 -35.23 -0.36 -9.30 15 11 C 0.07 1.20 5.85 37.16 0.22 1.41 15 12 C -0.11 -1.63 4.34 -90.09 -0.39 -2.02 15 13 C 0.01 0.07 8.20 -7.54 -0.06 0.01 15 14 N -0.63 -7.77 8.71 -122.62 -1.07 -8.84 15 15 C 0.01 0.09 8.19 -7.53 -0.06 0.02 15 16 H 0.27 7.63 8.31 -40.82 -0.34 7.29 15 17 H 0.00 0.08 7.20 -51.93 -0.37 -0.29 15 18 H 0.00 -0.05 7.57 -51.93 -0.39 -0.44 15 19 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 20 H 0.04 0.62 7.81 -51.93 -0.41 0.22 15 21 H 0.11 1.76 8.14 -51.93 -0.42 1.34 15 22 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.06 0.67 8.10 -51.93 -0.42 0.25 15 24 H 0.32 3.16 8.91 -39.29 -0.35 2.81 15 25 H 0.07 0.83 7.87 -51.93 -0.41 0.42 15 26 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 LS Contribution 224.42 15.07 3.38 3.38 Total: -1.00 -31.63 224.42 -6.15 -37.77 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -3.63 Total: -2.80 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.57 Total: -10.00 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.29 Total: -35.78 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.36 Total: -9.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.63 -6.15 -37.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.472 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds