Wall clock time and date at job start Mon Mar 30 2020 02:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00151 * 2 1 4 4 H 1.48503 * 109.47145 * 270.00103 * 3 2 1 5 5 H 1.48503 * 109.47396 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.47276 * 150.00218 * 3 2 1 7 7 C 1.37880 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00127 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99567 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00346 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47211 * 179.97438 * 11 10 9 13 13 C 1.53515 * 114.16965 * 185.00043 * 12 11 10 14 14 N 1.47481 * 87.93334 * 220.32733 * 13 12 11 15 15 C 1.47488 * 87.83530 * 27.00963 * 14 13 12 16 16 H 0.97006 * 119.99681 * 359.97438 * 1 2 3 17 17 H 1.08990 * 109.47359 * 60.00037 * 9 7 2 18 18 H 1.09005 * 109.47091 * 299.99567 * 9 7 2 19 19 H 1.08997 * 109.46915 * 59.99745 * 11 10 9 20 20 H 1.09000 * 109.47082 * 299.99658 * 11 10 9 21 21 H 1.09002 * 113.38857 * 318.07878 * 12 11 10 22 22 H 1.09004 * 113.47747 * 105.56637 * 13 12 11 23 23 H 1.08995 * 113.53124 * 335.10698 * 13 12 11 24 24 H 1.00901 * 110.99857 * 138.69928 * 14 13 12 25 25 H 1.08996 * 113.47304 * 87.75121 * 15 14 13 26 26 H 1.08997 * 113.47652 * 218.22256 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5414 -0.0022 11 6 5.4124 -2.6543 -0.0034 12 6 5.8068 -4.1325 -0.0039 13 6 7.3170 -4.3802 0.1169 14 7 7.1657 -5.4587 -0.8775 15 6 5.9950 -4.7325 -1.4043 16 1 -0.4850 0.8401 0.0004 17 1 3.8752 -0.6805 0.8887 18 1 3.8745 -0.6801 -0.8912 19 1 5.8158 -2.1712 0.8865 20 1 5.8144 -2.1704 -0.8935 21 1 5.1997 -4.7426 0.6650 22 1 7.6213 -4.7366 1.1011 23 1 7.9242 -3.5465 -0.2356 24 1 7.9260 -5.4483 -1.5407 25 1 6.2487 -3.9923 -2.1632 26 1 5.1790 -5.3874 -1.7094 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:16 Heat of formation + Delta-G solvation = -42.993882 kcal Electronic energy + Delta-G solvation = -9714.441448 eV Core-core repulsion = 7793.158363 eV Total energy + Delta-G solvation = -1921.283085 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.68896 -38.31478 -34.88167 -31.33979 -29.45615 -26.75869 -24.99400 -23.91537 -20.58010 -19.14312 -17.45419 -17.34096 -16.92755 -16.39038 -15.90842 -14.80097 -14.56365 -14.02858 -13.68177 -13.41441 -13.05469 -12.66795 -12.26442 -11.89054 -11.82832 -11.51162 -11.33682 -10.92259 -10.38273 -10.00141 -8.38550 -6.47332 1.33131 1.36716 1.47651 2.28958 2.91790 2.94122 3.22450 3.54181 4.00650 4.28620 4.34904 4.41389 4.49293 4.63251 4.67119 4.83053 4.84091 4.97587 5.05201 5.22361 5.41532 5.92484 6.32566 6.56998 6.73133 7.17456 8.78770 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.100938 B = 0.009270 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.330858 B = 3019.890884 C = 3179.056375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.244 1.244 7 C -0.550 4.550 8 H 0.028 0.972 9 C 0.178 3.822 10 O -0.409 6.409 11 C 0.062 3.938 12 C -0.121 4.121 13 C 0.021 3.979 14 N -0.638 5.638 15 C 0.007 3.993 16 H 0.274 0.726 17 H 0.014 0.986 18 H 0.014 0.986 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.333 0.667 25 H 0.079 0.921 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.310 -2.595 -1.437 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.588 4.588 8 H 0.046 0.954 9 C 0.103 3.897 10 O -0.329 6.329 11 C -0.015 4.015 12 C -0.140 4.140 13 C -0.109 4.109 14 N -0.264 5.264 15 C -0.124 4.124 16 H 0.083 0.917 17 H 0.032 0.968 18 H 0.031 0.969 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.108 0.892 22 H 0.113 0.887 23 H 0.107 0.893 24 H 0.146 0.854 25 H 0.098 0.902 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.764 -3.399 -1.034 16.159 hybrid contribution 0.052 1.479 -0.490 1.559 sum 15.816 -1.920 -1.524 16.004 Atomic orbital electron populations 1.70043 1.08352 1.28878 1.50923 1.25887 0.95830 1.03549 0.93301 0.85564 0.79426 0.77198 0.79872 1.18233 1.19807 1.16750 1.21193 0.91083 0.93872 1.52662 0.95356 1.20338 0.93242 0.80904 0.95231 1.87879 1.21337 1.28417 1.95272 1.22623 0.81785 0.96526 1.00615 1.22714 0.97880 0.94563 0.98873 1.23577 0.93896 0.94195 0.99198 1.67277 1.07686 1.38037 1.13388 1.23655 0.95455 0.96966 0.96289 0.91729 0.96837 0.96872 0.92594 0.92597 0.89231 0.88736 0.89350 0.85398 0.90239 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.67 13.96 21.45 0.30 -59.37 15 2 C 0.01 0.73 5.47 84.65 0.46 1.19 15 3 Si 0.96 43.08 27.47 68.60 1.88 44.96 15 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 15 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 6 H -0.24 -10.04 6.54 99.48 0.65 -9.38 15 7 C -0.55 -33.94 9.99 25.60 0.26 -33.69 15 8 H 0.03 1.97 8.06 -2.91 -0.02 1.95 15 9 C 0.18 9.00 4.76 71.24 0.34 9.34 15 10 O -0.41 -19.28 10.33 -148.98 -1.54 -20.82 15 11 C 0.06 2.05 5.85 71.98 0.42 2.47 15 12 C -0.12 -3.46 4.34 -10.45 -0.05 -3.51 15 13 C 0.02 0.44 8.20 83.58 0.69 1.13 15 14 N -0.64 -14.18 8.71 -541.87 -4.72 -18.90 15 15 C 0.01 0.17 8.19 83.58 0.68 0.85 15 16 H 0.27 15.82 8.31 -92.70 -0.77 15.05 15 17 H 0.01 0.67 7.20 -2.39 -0.02 0.65 15 18 H 0.01 0.64 7.57 -2.38 -0.02 0.62 15 19 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.06 1.66 7.81 -2.39 -0.02 1.64 15 21 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 22 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.09 1.44 8.10 -2.39 -0.02 1.42 15 24 H 0.33 5.65 8.91 -89.69 -0.80 4.85 15 25 H 0.08 1.81 7.87 -2.39 -0.02 1.79 15 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 Total: -1.00 -69.72 224.42 -0.97 -70.69 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.30 Total: 5.66 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 2.80 Total: -22.22 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -4.42 Total: -78.27 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.54 Total: -20.82 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Total: -69.72 -0.97 -70.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.694 kcal (2) G-P(sol) polarization free energy of solvation -69.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds