Wall clock time and date at job start Mon Mar 30 2020 01:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35225 * 116.99693 * 2 1 4 4 N 1.27736 * 125.78058 * 359.68675 * 3 2 1 5 5 O 1.41375 * 113.15647 * 180.15397 * 4 3 2 6 6 C 1.44247 * 107.58085 * 343.05937 * 5 4 3 7 7 H 1.09004 * 111.00454 * 266.83639 * 6 5 4 8 8 C 1.50693 * 111.01159 * 142.97171 * 6 5 4 9 9 H 1.08004 * 120.00029 * 247.82632 * 8 6 5 10 10 C 1.37878 * 120.00423 * 67.82707 * 8 6 5 11 11 N 1.31512 * 119.99434 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 120.00248 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47189 * 59.99915 * 12 10 8 14 14 H 1.48501 * 109.46737 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46884 * 299.99994 * 12 10 8 16 16 C 1.51686 * 125.77112 * 180.02562 * 3 2 1 17 17 H 1.09000 * 109.47187 * 300.00409 * 1 2 3 18 18 H 1.09001 * 109.46558 * 60.00456 * 1 2 3 19 19 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 20 20 H 0.96999 * 120.00153 * 180.02562 * 11 10 8 21 21 H 1.08996 * 110.80790 * 313.52825 * 16 3 2 22 22 H 1.09003 * 110.81030 * 77.03762 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0429 1.2049 0.0000 4 7 1.4586 2.3408 -0.0057 5 8 2.3602 3.4297 -0.0075 6 6 3.6502 2.9280 0.3983 7 1 3.7909 3.0361 1.4738 8 6 4.7587 3.6108 -0.3607 9 1 5.3501 3.0527 -1.0714 10 6 5.0179 4.9482 -0.1478 11 7 4.2981 5.6277 0.7181 12 14 6.3915 5.7948 -1.0891 13 1 6.1184 5.7099 -2.5463 14 1 6.4645 7.2210 -0.6819 15 1 7.6829 5.1266 -0.7878 16 6 3.5420 1.4363 -0.0006 17 1 -0.3633 0.5139 0.8899 18 1 -0.3632 0.5138 -0.8901 19 1 -0.3633 -1.0277 -0.0005 20 1 4.4802 6.5686 0.8676 21 1 4.0320 0.8017 0.7378 22 1 3.9592 1.2697 -0.9937 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217202.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:17 Heat of formation + Delta-G solvation = -41.764026 kcal Electronic energy + Delta-G solvation = -9813.709423 eV Core-core repulsion = 7756.646574 eV Total energy + Delta-G solvation = -2057.062849 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.08775 -39.01442 -34.95016 -32.63701 -31.59265 -28.50411 -27.15902 -23.11936 -21.95296 -19.12733 -18.15931 -17.11212 -17.02294 -16.59504 -15.64199 -15.31740 -14.58599 -13.86590 -13.62254 -13.24004 -12.81316 -12.75731 -12.51968 -12.30153 -11.68875 -11.55649 -11.18300 -10.75937 -9.77730 -8.28064 -6.52374 1.15937 1.42707 1.46000 1.54856 1.65608 2.35602 2.68814 3.08726 4.00700 4.07940 4.26122 4.29442 4.35937 4.42380 4.71277 4.89288 5.18576 5.59688 5.86165 6.15865 6.55735 6.85538 7.25326 8.81265 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.118673 B = 0.011935 C = 0.011344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 235.885241 B = 2345.423802 C = 2467.654165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.290 6.290 3 C 0.250 3.750 4 N -0.412 5.412 5 O -0.208 6.208 6 C 0.168 3.832 7 H 0.022 0.978 8 C -0.556 4.556 9 H 0.083 0.917 10 C 0.019 3.981 11 N -0.907 5.907 12 Si 0.979 3.021 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.256 1.256 16 C -0.109 4.109 17 H 0.053 0.947 18 H 0.054 0.946 19 H 0.144 0.856 20 H 0.269 0.731 21 H 0.117 0.883 22 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 -9.322 -1.749 9.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.021 3.979 4 N -0.177 5.177 5 O -0.229 6.229 6 C 0.112 3.888 7 H 0.039 0.961 8 C -0.594 4.594 9 H 0.101 0.899 10 C -0.183 4.183 11 N -0.544 5.544 12 Si 0.802 3.198 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.180 1.180 16 C -0.149 4.149 17 H 0.072 0.928 18 H 0.073 0.927 19 H 0.162 0.838 20 H 0.078 0.922 21 H 0.135 0.865 22 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.883 -8.788 -1.708 9.405 hybrid contribution 0.911 0.485 -0.114 1.038 sum -1.972 -8.303 -1.822 8.727 Atomic orbital electron populations 1.23358 0.75608 1.05993 1.02163 1.86128 1.24213 1.20875 1.88265 1.24664 0.94547 0.86220 0.92422 1.77517 1.20750 0.96647 1.22789 1.91409 1.20313 1.22559 1.88598 1.21245 0.83295 0.88656 0.95613 0.96055 1.21380 1.15049 0.96546 1.26431 0.89938 1.26147 0.98721 0.98214 0.95265 1.70156 1.40334 1.09546 1.34317 0.85308 0.78729 0.77118 0.78687 1.19329 1.20736 1.18026 1.22847 0.88299 0.97950 1.05767 0.92781 0.92684 0.83827 0.92228 0.86514 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.66 113.37 1.21 1.77 14 2 O -0.29 -9.52 10.55 -85.07 -0.90 -10.42 14 3 C 0.25 10.31 8.16 89.02 0.73 11.04 14 4 N -0.41 -20.17 11.79 -166.15 -1.96 -22.13 14 5 O -0.21 -12.22 12.14 -38.28 -0.46 -12.69 14 6 C 0.17 9.05 3.54 30.46 0.11 9.16 14 7 H 0.02 1.25 8.14 -2.39 -0.02 1.23 14 8 C -0.56 -30.99 8.82 25.60 0.23 -30.76 14 9 H 0.08 4.24 7.61 -2.91 -0.02 4.22 14 10 C 0.02 1.09 5.46 84.66 0.46 1.56 14 11 N -0.91 -55.01 13.21 21.45 0.28 -54.73 14 12 Si 0.98 42.97 29.54 68.60 2.03 45.00 14 13 H -0.27 -11.48 7.11 99.48 0.71 -10.78 14 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 14 15 H -0.26 -10.46 7.11 99.48 0.71 -9.75 14 16 C -0.11 -4.53 6.63 30.77 0.20 -4.33 14 17 H 0.05 1.39 8.14 -2.39 -0.02 1.37 14 18 H 0.05 1.41 8.14 -2.39 -0.02 1.39 14 19 H 0.14 2.19 8.14 -2.39 -0.02 2.18 14 20 H 0.27 15.26 8.31 -92.71 -0.77 14.49 14 21 H 0.12 4.07 8.14 -2.39 -0.02 4.05 14 22 H 0.11 4.28 7.77 -2.39 -0.02 4.26 14 Total: -1.00 -68.47 206.22 3.14 -65.34 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.21 Total: 1.19 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 2.93 Total: -11.56 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -1.68 Total: -76.86 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.36 Total: -23.11 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -68.47 3.14 -65.34 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217202.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.571 kcal (2) G-P(sol) polarization free energy of solvation -68.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds