Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.08990 * 109.72977 * 300.64657 * 9 7 2 11 11 C 1.53485 * 109.72933 * 179.97438 * 9 7 2 12 12 C 1.53141 * 108.36008 * 178.61715 * 11 9 7 13 13 N 1.46049 * 109.91182 * 47.97791 * 12 11 9 14 14 C 1.33734 * 122.96467 * 340.55966 * 13 12 11 15 15 O 1.21510 * 118.46209 * 182.28710 * 14 13 12 16 16 O 1.34209 * 123.07539 * 2.28858 * 14 13 12 17 17 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 18 18 H 1.08998 * 109.69136 * 298.33090 * 11 9 7 19 19 H 1.08995 * 109.68549 * 58.86548 * 11 9 7 20 20 H 1.08998 * 109.39431 * 168.11889 * 12 11 9 21 21 H 1.08998 * 109.39504 * 287.93315 * 12 11 9 22 22 H 0.97001 * 118.51811 * 160.57987 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6145 -2.5565 0.8823 11 6 2.2431 -3.6703 -0.0018 12 6 1.4462 -4.9775 0.0333 13 7 0.3830 -4.9390 -0.9673 14 6 -0.0722 -3.8008 -1.5020 15 8 -0.9889 -3.8606 -2.2973 16 8 0.4361 -2.5957 -1.2012 17 1 -0.4849 0.8400 0.0004 18 1 2.8514 -3.6353 -0.9056 19 1 2.8860 -3.6078 0.8761 20 1 2.1127 -5.8135 -0.1786 21 1 1.0063 -5.1069 1.0222 22 1 -0.0109 -5.7768 -1.2570 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260282305.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = -116.063728 kcal Electronic energy + Delta-G solvation = -10085.430146 eV Core-core repulsion = 8025.145420 eV Total energy + Delta-G solvation = -2060.284726 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.44563 -38.05069 -36.17345 -34.86084 -32.26548 -28.62835 -25.37998 -24.05117 -20.64560 -19.47665 -18.33744 -18.18820 -16.81206 -16.48680 -15.70484 -15.08336 -14.87256 -14.56379 -13.52311 -12.96861 -12.80077 -12.50794 -12.43755 -12.25493 -11.88804 -11.05304 -10.83345 -10.66373 -10.11674 -8.29913 -6.55678 1.42000 1.44965 1.53941 1.88462 2.21758 2.35256 2.80785 3.43681 3.97063 4.11208 4.39301 4.64494 4.79471 4.84334 5.32553 5.52783 5.60910 5.88726 6.00313 6.56939 7.16973 7.27150 7.33982 8.77949 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.071883 B = 0.015896 C = 0.013720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.427533 B = 1761.063489 C = 2040.356452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.200 3.800 10 H 0.019 0.981 11 C -0.154 4.154 12 C 0.106 3.894 13 N -0.721 5.721 14 C 0.634 3.366 15 O -0.618 6.618 16 O -0.361 6.361 17 H 0.268 0.732 18 H 0.068 0.932 19 H 0.116 0.884 20 H 0.123 0.877 21 H 0.081 0.919 22 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -7.504 3.381 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.185 4.185 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.148 3.852 10 H 0.037 0.963 11 C -0.191 4.191 12 C -0.017 4.017 13 N -0.389 5.389 14 C 0.389 3.611 15 O -0.511 6.511 16 O -0.271 6.271 17 H 0.076 0.924 18 H 0.087 0.913 19 H 0.134 0.866 20 H 0.141 0.859 21 H 0.099 0.901 22 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.063 -6.945 3.014 9.700 hybrid contribution -0.180 0.551 -0.157 0.600 sum 5.883 -6.394 2.858 9.147 Atomic orbital electron populations 1.70175 1.08310 1.28515 1.46492 1.26212 0.95627 1.04235 0.92393 0.85355 0.78176 0.76996 0.79607 1.19348 1.21159 1.17727 1.21489 0.93914 0.90210 1.53596 0.89474 1.20894 0.87791 0.95936 0.80595 0.96276 1.22468 0.98575 0.93362 1.04732 1.21850 0.88937 0.99251 0.91618 1.45202 1.41000 1.07442 1.45241 1.18736 0.80585 0.81619 0.80190 1.90812 1.31832 1.86965 1.41516 1.87165 1.64983 1.27117 1.47839 0.92352 0.91342 0.86615 0.85876 0.90115 0.74163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.39 12.91 21.45 0.28 -54.12 14 2 C 0.02 1.08 5.41 84.66 0.46 1.53 14 3 Si 0.98 42.34 29.54 68.60 2.03 44.37 14 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 14 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 14 6 H -0.25 -10.11 7.11 99.48 0.71 -9.40 14 7 C -0.56 -29.66 8.82 25.60 0.23 -29.43 14 8 H 0.09 4.26 7.75 -2.91 -0.02 4.24 14 9 C 0.20 9.92 2.77 30.01 0.08 10.01 14 10 H 0.02 1.03 8.14 -2.39 -0.02 1.01 14 11 C -0.15 -5.29 5.51 30.80 0.17 -5.12 14 12 C 0.11 2.81 7.26 86.51 0.63 3.44 14 13 N -0.72 -24.91 5.52 -594.24 -3.28 -28.18 14 14 C 0.63 31.45 8.55 129.95 1.11 32.56 14 15 O -0.62 -34.79 17.95 19.93 0.36 -34.43 14 16 O -0.36 -20.47 9.66 -51.15 -0.49 -20.97 14 17 H 0.27 15.31 8.31 -92.71 -0.77 14.54 14 18 H 0.07 2.40 8.14 -2.39 -0.02 2.38 14 19 H 0.12 3.33 8.14 -2.39 -0.02 3.31 14 20 H 0.12 2.11 8.14 -2.39 -0.02 2.09 14 21 H 0.08 1.90 8.14 -2.39 -0.02 1.88 14 22 H 0.42 11.76 8.84 -92.71 -0.82 10.95 14 Total: -1.00 -73.70 200.82 1.98 -71.72 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.41 Total: 8.62 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 2.68 Total: 12.98 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.00 Total: -82.30 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.14 Total: -55.40 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -73.70 1.98 -71.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260282305.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.342 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds