Wall clock time and date at job start Mon Mar 30 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48505 * 109.47187 * 269.99964 * 3 2 1 5 5 H 1.48494 * 109.47339 * 30.00153 * 3 2 1 6 6 H 1.48503 * 109.47180 * 150.00043 * 3 2 1 7 7 C 1.37878 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99563 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00033 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.72819 * 59.35475 * 9 7 2 11 11 C 1.53484 * 109.73041 * 180.02562 * 9 7 2 12 12 C 1.53136 * 108.39301 * 181.36334 * 11 9 7 13 13 N 1.46078 * 109.90417 * 312.08067 * 12 11 9 14 14 C 1.33733 * 122.97035 * 19.36773 * 13 12 11 15 15 O 1.21514 * 118.45485 * 177.73002 * 14 13 12 16 16 O 1.34203 * 123.08425 * 357.75123 * 14 13 12 17 17 H 0.97000 * 120.00281 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.68746 * 301.10271 * 11 9 7 19 19 H 1.09002 * 109.68617 * 61.63101 * 11 9 7 20 20 H 1.09004 * 109.39432 * 72.17494 * 12 11 9 21 21 H 1.08992 * 109.39687 * 191.90044 * 12 11 9 22 22 H 0.96997 * 118.50670 * 199.40221 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 1 3.8798 -0.6712 0.8815 11 6 4.0298 -2.6387 -0.0023 12 6 5.5604 -2.6030 0.0317 13 7 6.0583 -1.6623 -0.9688 14 6 5.2999 -0.6992 -1.5033 15 8 5.8098 0.0649 -2.2987 16 8 4.0022 -0.5367 -1.2021 17 1 -0.4850 0.8400 0.0004 18 1 3.6551 -3.1639 0.8763 19 1 3.6944 -3.1483 -0.9056 20 1 5.8932 -2.2885 1.0209 21 1 5.9504 -3.5984 -0.1804 22 1 6.9806 -1.7402 -1.2590 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260282311.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:22 Heat of formation + Delta-G solvation = -86.142549 kcal Electronic energy + Delta-G solvation = -10162.131104 eV Core-core repulsion = 8103.143857 eV Total energy + Delta-G solvation = -2058.987247 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.95372 -36.42014 -34.80877 -32.87194 -30.82758 -27.29318 -23.77127 -22.09666 -19.23801 -17.79047 -16.95349 -16.63128 -15.21738 -14.53708 -14.21791 -13.79272 -13.38196 -12.60755 -12.30909 -11.53574 -11.07015 -10.93444 -10.47877 -10.41695 -9.92684 -9.31476 -9.20406 -8.82211 -8.80037 -6.35987 -4.50185 3.22836 3.34847 3.50334 3.57820 3.61292 4.30831 4.38302 5.14413 5.26339 5.32228 5.57017 5.95588 5.99452 6.13430 6.70746 6.88769 7.20110 7.35182 8.13144 8.55035 8.69510 8.84434 9.24162 10.72233 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.057167 B = 0.020700 C = 0.016547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.677304 B = 1352.312316 C = 1691.758309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.090 3.910 3 Si 0.899 3.101 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.090 0.910 9 C 0.174 3.826 10 H 0.049 0.951 11 C -0.153 4.153 12 C 0.104 3.896 13 N -0.740 5.740 14 C 0.645 3.355 15 O -0.571 6.571 16 O -0.348 6.348 17 H 0.272 0.728 18 H 0.093 0.907 19 H 0.076 0.924 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.801 -4.685 2.634 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.118 4.118 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.558 4.558 8 H 0.108 0.892 9 C 0.122 3.878 10 H 0.066 0.934 11 C -0.191 4.191 12 C -0.020 4.020 13 N -0.407 5.407 14 C 0.400 3.600 15 O -0.459 6.459 16 O -0.259 6.259 17 H 0.082 0.918 18 H 0.112 0.888 19 H 0.095 0.905 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.377 -4.045 2.230 9.566 hybrid contribution 0.794 0.540 -0.003 0.960 sum 9.171 -3.505 2.227 10.067 Atomic orbital electron populations 1.69892 1.06595 1.28217 1.46086 1.25106 0.94851 1.00126 0.91693 0.86455 0.79284 0.81935 0.79677 1.19133 1.21852 1.19432 1.20895 0.86503 0.95502 1.52921 0.89219 1.21396 0.96150 0.88311 0.81960 0.93359 1.22395 0.92454 0.99915 1.04315 1.21601 0.96278 0.92661 0.91471 1.45333 1.15512 1.34136 1.45744 1.18451 0.81718 0.79800 0.80038 1.90894 1.69946 1.46134 1.38970 1.87159 1.20200 1.70604 1.47976 0.91797 0.88819 0.90545 0.91969 0.90787 0.75822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.70 13.96 55.43 0.77 -24.92 14 2 C 0.09 2.57 5.47 -17.82 -0.10 2.47 14 3 Si 0.90 23.04 26.25 -169.99 -4.46 18.57 14 4 H -0.27 -7.16 7.11 56.52 0.40 -6.75 14 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 14 6 H -0.27 -6.74 6.53 56.52 0.37 -6.37 14 7 C -0.52 -14.18 9.40 -34.44 -0.32 -14.50 14 8 H 0.09 2.53 8.00 -52.48 -0.42 2.11 14 9 C 0.17 4.02 2.23 -27.63 -0.06 3.96 14 10 H 0.05 1.11 7.16 -51.93 -0.37 0.74 14 11 C -0.15 -2.68 5.51 -26.41 -0.15 -2.83 14 12 C 0.10 1.45 7.27 -4.20 -0.03 1.42 14 13 N -0.74 -12.46 5.52 -65.90 -0.36 -12.83 14 14 C 0.64 14.71 8.55 53.59 0.46 15.17 14 15 O -0.57 -14.61 17.95 -19.41 -0.35 -14.96 14 16 O -0.35 -8.86 8.00 -39.25 -0.31 -9.17 14 17 H 0.27 7.48 8.31 -40.82 -0.34 7.14 14 18 H 0.09 1.45 8.14 -51.93 -0.42 1.03 14 19 H 0.08 1.39 8.14 -51.93 -0.42 0.96 14 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 14 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 14 22 H 0.41 5.62 8.84 -40.82 -0.36 5.26 14 LS Contribution 195.72 15.07 2.95 2.95 Total: -1.00 -32.62 195.72 -3.98 -36.60 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -2.01 Total: -1.93 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.20 Total: 5.69 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.41 Total: -37.75 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.66 Total: -24.13 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.46 Total: 18.57 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -32.62 -3.98 -36.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260282311.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.546 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds