Wall clock time and date at job start Mon Mar 30 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00174 * 2 1 4 4 H 1.48497 * 109.47361 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47036 * 120.00004 * 3 2 1 6 6 H 1.48501 * 109.46902 * 239.99884 * 3 2 1 7 7 C 1.37876 * 119.99375 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99496 * 173.94248 * 7 2 1 9 9 C 1.50694 * 120.00624 * 353.94589 * 7 2 1 10 10 C 1.53008 * 112.93791 * 291.99700 * 9 7 2 11 11 C 1.52999 * 109.47236 * 297.40789 * 10 9 7 12 12 O 1.42893 * 109.47025 * 175.54752 * 11 10 9 13 13 C 1.53930 * 113.73793 * 160.29227 * 9 7 2 14 14 N 1.47960 * 86.18384 * 221.92133 * 13 9 7 15 15 C 1.47970 * 90.76171 * 24.68718 * 14 13 9 16 16 H 0.97002 * 119.99610 * 359.97438 * 1 2 3 17 17 H 1.09003 * 109.46733 * 57.40588 * 10 9 7 18 18 H 1.09002 * 109.46942 * 177.40174 * 10 9 7 19 19 H 1.09005 * 109.46688 * 295.54770 * 11 10 9 20 20 H 1.08997 * 109.46807 * 55.54495 * 11 10 9 21 21 H 0.96699 * 113.99722 * 180.02562 * 12 11 10 22 22 H 1.09005 * 113.75890 * 336.23705 * 13 9 7 23 23 H 1.09002 * 113.76393 * 107.60096 * 13 9 7 24 24 H 1.00897 * 111.00488 * 137.57699 * 14 13 9 25 25 H 1.08999 * 113.75797 * 220.99430 * 15 14 13 26 26 H 1.08999 * 113.75689 * 89.62923 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0799 -1.1968 -0.0982 9 6 1.2573 -2.4955 0.1387 10 6 0.6251 -2.6763 1.5204 11 6 1.7250 -2.7170 2.5831 12 8 1.1310 -2.7816 3.8811 13 6 2.0522 -3.7210 -0.3466 14 7 0.7848 -4.1769 -0.9591 15 6 0.2929 -2.7829 -1.0262 16 1 -0.4850 0.8401 0.0004 17 1 -0.0466 -1.8425 1.7245 18 1 0.0629 -3.6099 1.5433 19 1 2.3502 -3.5960 2.4254 20 1 2.3365 -1.8179 2.5076 21 1 1.7710 -2.8098 4.6055 22 1 2.8293 -3.4811 -1.0724 23 1 2.4059 -4.3629 0.4603 24 1 0.9432 -4.5493 -1.8833 25 1 -0.7591 -2.6754 -0.7622 26 1 0.5554 -2.2687 -1.9507 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283785.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:15 Heat of formation + Delta-G solvation = -52.976824 kcal Electronic energy + Delta-G solvation = -10365.947903 eV Core-core repulsion = 8444.231925 eV Total energy + Delta-G solvation = -1921.715978 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.37685 -37.52684 -34.60845 -32.01769 -28.25455 -26.62574 -25.51781 -23.06113 -19.98093 -18.50353 -18.00508 -16.90412 -16.08033 -15.76805 -15.37253 -14.88905 -14.14960 -13.83292 -13.21486 -12.87839 -12.72660 -12.59685 -12.25230 -11.97511 -11.64667 -10.93477 -10.76405 -10.61739 -10.37800 -9.60296 -8.07371 -6.18485 1.43417 1.45269 1.51473 2.44661 3.21516 3.49357 3.65753 4.26711 4.47504 4.51848 4.61633 4.71932 4.86837 4.98846 5.13572 5.31915 5.34370 5.40909 5.62550 5.74042 5.99226 6.38554 6.64291 6.86210 7.04913 7.48985 8.98657 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.036640 B = 0.021313 C = 0.015971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.017430 B = 1313.447058 C = 1752.772174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.944 3.056 4 H -0.290 1.290 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.049 3.951 10 C -0.072 4.072 11 C 0.094 3.906 12 O -0.597 6.597 13 C 0.012 3.988 14 N -0.644 5.644 15 C 0.041 3.959 16 H 0.259 0.741 17 H 0.039 0.961 18 H 0.035 0.965 19 H 0.051 0.949 20 H 0.042 0.958 21 H 0.390 0.610 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.313 0.687 25 H 0.048 0.952 26 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -3.528 1.601 6.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.174 4.174 3 Si 0.771 3.229 4 H -0.216 1.216 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.048 3.952 10 C -0.110 4.110 11 C 0.017 3.983 12 O -0.405 6.405 13 C -0.118 4.118 14 N -0.269 5.269 15 C -0.089 4.089 16 H 0.068 0.932 17 H 0.058 0.942 18 H 0.053 0.947 19 H 0.069 0.931 20 H 0.060 0.940 21 H 0.239 0.761 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.125 0.875 25 H 0.066 0.934 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.655 -3.803 1.853 5.591 hybrid contribution 1.136 1.541 -0.568 1.997 sum 4.790 -2.262 1.285 5.451 Atomic orbital electron populations 1.70080 1.07112 1.27112 1.50157 1.25617 0.95415 1.01824 0.94583 0.85832 0.78519 0.79816 0.78779 1.21596 1.19713 1.19708 1.21215 0.93287 0.91166 1.50783 0.92375 1.19640 0.92452 0.92350 0.90786 1.20956 0.97087 0.98632 0.94325 1.22017 0.95231 0.99396 0.81636 1.86434 1.39548 1.97631 1.16890 1.23806 0.92230 0.96827 0.98909 1.66859 1.17968 1.18729 1.23350 1.23328 0.99052 0.87485 0.99048 0.93195 0.94208 0.94665 0.93090 0.93954 0.76110 0.92115 0.90348 0.87534 0.93375 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.08 11.72 21.45 0.25 -50.83 15 2 C 0.03 1.39 5.31 84.65 0.45 1.84 15 3 Si 0.94 42.24 29.54 68.60 2.03 44.27 15 4 H -0.29 -13.02 7.11 99.48 0.71 -12.32 15 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 15 7 C -0.53 -27.21 7.35 25.60 0.19 -27.02 15 8 H 0.06 2.93 7.82 -2.91 -0.02 2.91 15 9 C 0.05 2.32 0.40 -52.28 -0.02 2.30 15 10 C -0.07 -3.46 4.87 30.60 0.15 -3.31 15 11 C 0.09 3.85 6.77 71.98 0.49 4.34 15 12 O -0.60 -22.54 13.66 -148.98 -2.03 -24.58 15 13 C 0.01 0.50 7.87 86.40 0.68 1.18 15 14 N -0.64 -26.03 8.37 -523.34 -4.38 -30.41 15 15 C 0.04 1.96 7.17 86.40 0.62 2.58 15 16 H 0.26 14.13 8.31 -92.71 -0.77 13.36 15 17 H 0.04 2.19 7.25 -2.39 -0.02 2.18 15 18 H 0.03 1.68 8.02 -2.39 -0.02 1.66 15 19 H 0.05 1.83 7.14 -2.38 -0.02 1.82 15 20 H 0.04 1.82 7.35 -2.39 -0.02 1.80 15 21 H 0.39 9.87 9.12 -74.06 -0.68 9.20 15 22 H 0.06 2.33 8.09 -2.38 -0.02 2.31 15 23 H 0.08 2.90 7.09 -2.39 -0.02 2.89 15 24 H 0.31 10.87 8.91 -89.70 -0.80 10.07 15 25 H 0.05 2.47 8.10 -2.39 -0.02 2.45 15 26 H 0.04 1.99 8.09 -2.39 -0.02 1.97 15 Total: -1.00 -59.71 219.64 -1.88 -61.59 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -0.29 Total: 18.05 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 2.55 Total: -18.09 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -4.13 Total: -81.24 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -2.03 Total: -24.58 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -59.71 -1.88 -61.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283785.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.614 kcal (2) G-P(sol) polarization free energy of solvation -59.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds