Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00204 * 2 1 4 4 H 1.48501 * 109.47092 * 239.99841 * 3 2 1 5 5 H 1.48504 * 109.46883 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47148 * 119.99489 * 3 2 1 7 7 C 1.37877 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99857 * 0.02562 * 7 2 1 10 10 H 1.09008 * 108.85425 * 298.56177 * 9 7 2 11 11 C 1.54621 * 108.88137 * 179.97438 * 9 7 2 12 12 C 1.54570 * 110.90175 * 198.83590 * 11 9 7 13 13 O 1.39908 * 113.22641 * 319.28778 * 12 11 9 14 14 C 1.44516 * 112.80898 * 94.90115 * 13 12 11 15 15 C 1.46264 * 111.30878 * 280.44738 * 14 13 12 16 16 N 1.44086 * 108.91775 * 57.10940 * 9 7 2 17 17 H 0.96997 * 119.99388 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.19208 * 78.46815 * 11 9 7 19 19 H 1.09003 * 109.19114 * 319.20289 * 11 9 7 20 20 H 1.09002 * 108.73195 * 198.32431 * 12 11 9 21 21 H 1.09001 * 108.63841 * 80.19102 * 12 11 9 22 22 H 1.08992 * 109.11631 * 159.97195 * 14 13 12 23 23 H 1.09007 * 109.06023 * 40.87927 * 14 13 12 24 24 H 1.09002 * 108.91614 * 180.21609 * 15 14 13 25 25 H 1.08997 * 108.91280 * 298.85479 * 15 14 13 26 26 H 1.00900 * 111.09262 * 92.27452 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6474 -2.5574 0.9064 11 6 2.2678 -3.6640 0.0005 12 6 1.6009 -4.9782 -0.4657 13 8 0.3122 -5.1559 0.0494 14 6 -0.7196 -4.6955 -0.8517 15 6 -0.8710 -3.2421 -0.7881 16 7 0.3769 -2.5339 -1.1443 17 1 -0.4849 0.8401 -0.0004 18 1 2.6585 -3.7986 1.0092 19 1 3.0906 -3.4215 -0.6721 20 1 2.2222 -5.8168 -0.1512 21 1 1.5453 -4.9735 -1.5543 22 1 -1.6653 -5.1650 -0.5811 23 1 -0.4571 -4.9827 -1.8699 24 1 -1.6588 -2.9384 -1.4775 25 1 -1.1603 -2.9610 0.2245 26 1 0.8289 -2.9716 -1.9332 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260299193.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = -60.982569 kcal Electronic energy + Delta-G solvation = -10495.013897 eV Core-core repulsion = 8572.950763 eV Total energy + Delta-G solvation = -1922.063133 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.45443 -36.54043 -34.22205 -33.20459 -28.67400 -28.02251 -24.94933 -22.78209 -21.25576 -18.68952 -17.42117 -17.06610 -16.34641 -16.11591 -15.62353 -14.60314 -14.25010 -13.74450 -13.60550 -12.92238 -12.80655 -12.67356 -12.33598 -11.92579 -11.71492 -11.50719 -10.92267 -10.48561 -10.37961 -8.63879 -7.89888 -6.11429 1.44319 1.45741 1.52620 2.49941 2.97569 3.27898 3.94542 4.12864 4.17692 4.34639 4.48326 4.54471 4.65742 4.73733 4.91964 5.07810 5.20923 5.25888 5.49054 5.82757 6.30839 6.35436 6.69115 6.98834 7.31446 7.60385 9.11688 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.079161 B = 0.015469 C = 0.013557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.625560 B = 1809.587633 C = 2064.809273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.033 3.967 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.047 0.953 9 C 0.219 3.781 10 H -0.013 1.013 11 C -0.167 4.167 12 C 0.061 3.939 13 O -0.396 6.396 14 C 0.033 3.967 15 C 0.031 3.969 16 N -0.646 5.646 17 H 0.252 0.748 18 H 0.048 0.952 19 H 0.066 0.934 20 H 0.094 0.906 21 H 0.057 0.943 22 H 0.107 0.893 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -7.687 -3.129 8.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.170 4.170 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.589 4.589 8 H 0.065 0.935 9 C 0.110 3.890 10 H 0.005 0.995 11 C -0.207 4.207 12 C -0.017 4.017 13 O -0.315 6.315 14 C -0.044 4.044 15 C -0.099 4.099 16 N -0.274 5.274 17 H 0.061 0.939 18 H 0.067 0.933 19 H 0.085 0.915 20 H 0.112 0.888 21 H 0.075 0.925 22 H 0.125 0.875 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.040 -7.003 -2.838 7.556 hybrid contribution 0.697 0.366 0.041 0.788 sum 0.737 -6.637 -2.798 7.240 Atomic orbital electron populations 1.70194 1.07086 1.26061 1.48708 1.25666 0.95455 1.01752 0.94130 0.85823 0.78476 0.79824 0.78512 1.19814 1.21221 1.20058 1.21497 0.92188 0.92276 1.52934 0.93511 1.18792 0.89507 0.91705 0.88978 0.99522 1.23389 1.00166 0.96185 1.00983 1.22412 0.84347 0.96919 0.98001 1.87701 1.15414 1.82138 1.46257 1.22556 0.92478 0.95698 0.93701 1.21425 0.95328 0.92507 1.00612 1.60995 1.05509 1.53675 1.07196 0.93908 0.93347 0.91520 0.88798 0.92472 0.87488 0.91163 0.90804 0.94439 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.02 12.61 21.45 0.27 -52.75 15 2 C 0.03 1.87 5.37 84.65 0.45 2.33 15 3 Si 0.95 44.94 29.54 68.60 2.03 46.96 15 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 15 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 7 C -0.55 -31.40 8.66 25.60 0.22 -31.18 15 8 H 0.05 2.61 7.69 -2.91 -0.02 2.59 15 9 C 0.22 11.33 2.03 45.25 0.09 11.42 15 10 H -0.01 -0.79 7.10 -2.38 -0.02 -0.80 15 11 C -0.17 -6.96 5.64 31.68 0.18 -6.78 15 12 C 0.06 2.05 6.07 72.52 0.44 2.49 15 13 O -0.40 -14.69 10.39 -139.87 -1.45 -16.14 15 14 C 0.03 1.07 6.22 69.91 0.43 1.50 15 15 C 0.03 1.28 6.11 84.05 0.51 1.79 15 16 N -0.65 -30.71 5.54 -507.54 -2.81 -33.52 15 17 H 0.25 14.50 8.31 -92.71 -0.77 13.73 15 18 H 0.05 2.02 8.14 -2.38 -0.02 2.00 15 19 H 0.07 2.67 7.94 -2.39 -0.02 2.65 15 20 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 21 H 0.06 1.71 6.67 -2.39 -0.02 1.70 15 22 H 0.11 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.07 1.93 7.46 -2.38 -0.02 1.91 15 24 H 0.07 2.83 8.14 -2.39 -0.02 2.81 15 25 H 0.04 1.79 7.30 -2.39 -0.02 1.78 15 26 H 0.32 13.43 7.44 -89.69 -0.67 12.77 15 Total: -1.00 -64.63 211.98 0.86 -63.76 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.50 Total: 10.11 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 2.34 Total: -18.42 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.54 Total: -86.27 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.45 Total: -16.14 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.63 0.86 -63.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299193.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.782 kcal (2) G-P(sol) polarization free energy of solvation -64.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds