Wall clock time and date at job start Mon Mar 30 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.09001 * 108.87110 * 61.40135 * 9 7 2 11 11 C 1.46584 * 108.89250 * 180.02562 * 9 7 2 12 12 C 1.54357 * 111.47658 * 181.56203 * 11 9 7 13 13 O 1.40312 * 108.91673 * 283.01977 * 12 11 9 14 14 C 1.44241 * 117.15977 * 93.11751 * 13 12 11 15 15 C 1.53840 * 112.83128 * 317.91263 * 14 13 12 16 16 N 1.44343 * 112.12677 * 318.50482 * 15 14 13 17 17 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 18 18 H 1.09006 * 109.07639 * 302.07277 * 11 9 7 19 19 H 1.09001 * 109.07849 * 61.11056 * 11 9 7 20 20 H 1.09003 * 109.56517 * 42.84539 * 12 11 9 21 21 H 1.08998 * 109.56196 * 163.18416 * 12 11 9 22 22 H 1.08999 * 108.80997 * 78.77736 * 14 13 12 23 23 H 1.08998 * 108.81030 * 197.05186 * 14 13 12 24 24 H 1.08998 * 108.95295 * 79.18549 * 15 14 13 25 25 H 1.09001 * 108.95303 * 197.91112 * 15 14 13 26 26 H 1.00904 * 110.99787 * 328.98711 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6476 -2.5578 -0.9053 11 6 2.2149 -3.6036 0.0018 12 6 1.5046 -4.9735 -0.0373 13 8 1.0023 -5.2621 1.2406 14 6 -0.3608 -4.8781 1.5145 15 6 -0.7110 -3.4854 0.9626 16 7 0.3532 -2.5334 1.1741 17 1 -0.4850 -0.8401 -0.0004 18 1 2.8620 -3.5127 -0.8707 19 1 2.8234 -3.5444 0.9042 20 1 0.6831 -4.9384 -0.7529 21 1 2.2157 -5.7449 -0.3329 22 1 -1.0297 -5.6124 1.0657 23 1 -0.5158 -4.8777 2.5934 24 1 -0.9056 -3.5671 -0.1068 25 1 -1.6114 -3.1239 1.4593 26 1 0.8668 -2.7463 2.0161 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260299194.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:27 Heat of formation + Delta-G solvation = -70.243826 kcal Electronic energy + Delta-G solvation = -10511.988760 eV Core-core repulsion = 8589.524028 eV Total energy + Delta-G solvation = -1922.464732 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.50638 -36.93617 -34.22867 -33.34271 -28.39170 -28.00669 -25.02949 -22.47019 -21.84875 -19.18081 -17.77717 -16.96129 -16.18790 -16.05977 -15.57319 -14.87806 -14.31995 -14.03636 -13.79770 -13.11036 -12.68203 -12.46493 -12.30695 -12.05721 -11.90716 -11.38668 -10.92545 -10.43808 -10.25303 -9.03210 -8.32268 -6.21169 1.56414 1.64511 1.83261 2.65184 2.79519 3.29084 3.76180 3.83186 4.02442 4.17760 4.33264 4.39544 4.52671 4.58417 4.80683 4.89932 5.04870 5.08729 5.41114 6.03899 6.21872 6.33128 6.65590 6.84367 6.88207 7.72183 9.01026 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.081748 B = 0.015032 C = 0.013430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.431951 B = 1862.184443 C = 2084.390334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 1.110 2.890 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.629 4.629 8 H 0.038 0.962 9 C 0.196 3.804 10 H -0.008 1.008 11 C -0.152 4.152 12 C 0.070 3.930 13 O -0.404 6.404 14 C 0.034 3.966 15 C 0.025 3.975 16 N -0.671 5.671 17 H 0.277 0.723 18 H 0.064 0.936 19 H 0.051 0.949 20 H 0.045 0.955 21 H 0.104 0.896 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -7.952 1.069 8.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.216 4.216 3 Si 0.933 3.067 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.667 4.667 8 H 0.056 0.944 9 C 0.089 3.911 10 H 0.010 0.990 11 C -0.192 4.192 12 C -0.007 4.007 13 O -0.323 6.323 14 C -0.043 4.043 15 C -0.106 4.106 16 N -0.301 5.301 17 H 0.089 0.911 18 H 0.083 0.917 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.122 0.878 22 H 0.088 0.912 23 H 0.119 0.881 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.172 -5.867 0.982 5.951 hybrid contribution 0.376 -2.250 -0.186 2.289 sum 0.548 -8.117 0.796 8.174 Atomic orbital electron populations 1.70671 1.07782 1.32026 1.45052 1.26973 0.96773 1.05571 0.92270 0.83039 0.74136 0.72104 0.77381 1.21192 1.20258 1.20006 1.22263 0.93272 0.93291 1.57909 0.94371 1.18211 0.90384 0.94088 0.88385 0.98978 1.21786 0.99901 0.95833 1.01640 1.22486 0.97468 0.96072 0.84626 1.87351 1.29817 1.81433 1.33669 1.23813 0.82411 0.95965 1.02137 1.22429 0.97120 0.90912 1.00186 1.61066 1.14476 1.48823 1.05763 0.91128 0.91703 0.93071 0.93640 0.87772 0.91217 0.88108 0.93659 0.90585 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.96 13.46 21.45 0.29 -56.68 15 2 C -0.01 -0.72 5.37 84.65 0.45 -0.27 15 3 Si 1.11 51.47 29.90 68.60 2.05 53.52 15 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 7 C -0.63 -36.13 8.70 25.60 0.22 -35.91 15 8 H 0.04 2.18 7.72 -2.91 -0.02 2.16 15 9 C 0.20 9.94 1.52 42.01 0.06 10.00 15 10 H -0.01 -0.42 7.29 -2.39 -0.02 -0.44 15 11 C -0.15 -6.43 4.71 29.07 0.14 -6.30 15 12 C 0.07 2.42 6.39 72.44 0.46 2.88 15 13 O -0.40 -14.15 10.19 -143.37 -1.46 -15.61 15 14 C 0.03 1.07 6.74 72.27 0.49 1.55 15 15 C 0.02 0.94 5.97 87.06 0.52 1.46 15 16 N -0.67 -31.78 4.72 -508.14 -2.40 -34.17 15 17 H 0.28 17.18 6.23 -92.70 -0.58 16.61 15 18 H 0.06 2.68 8.13 -2.38 -0.02 2.66 15 19 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 20 H 0.05 1.54 7.15 -2.39 -0.02 1.52 15 21 H 0.10 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 23 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 24 H 0.04 1.81 6.72 -2.39 -0.02 1.79 15 25 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.33 15.18 8.24 -89.69 -0.74 14.44 15 Total: -1.00 -64.94 211.16 1.45 -63.49 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.61 Total: 16.02 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 2.35 Total: -26.57 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -2.11 Total: -90.85 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.46 Total: -15.61 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.05 Total: 53.52 kcal Total: -64.94 1.45 -63.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299194.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.751 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds