Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.63591 * 59.99957 * 9 7 2 11 11 N 1.47205 * 109.63603 * 180.41014 * 9 7 2 12 12 C 1.47004 * 110.71501 * 65.55592 * 11 9 7 13 13 C 1.53148 * 109.45680 * 61.55209 * 12 11 9 14 14 O 1.45688 * 108.92337 * 302.75652 * 13 12 11 15 15 C 1.35534 * 115.23364 * 50.91050 * 14 13 12 16 16 O 1.20834 * 121.37405 * 131.58448 * 15 14 13 17 17 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 18 18 H 1.00908 * 110.99966 * 301.80168 * 11 9 7 19 19 H 1.09009 * 109.47753 * 181.54502 * 12 11 9 20 20 H 1.09005 * 109.47772 * 301.54954 * 12 11 9 21 21 H 1.09002 * 109.56190 * 62.58322 * 13 12 11 22 22 H 1.08998 * 109.56359 * 182.81013 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6237 -2.5638 -0.8775 11 7 2.2043 -3.6207 0.0270 12 6 2.9664 -3.6381 1.2840 13 6 2.0052 -3.8312 2.4605 14 8 1.0122 -2.7655 2.4392 15 6 0.3870 -2.5820 1.2507 16 8 -0.8158 -2.4909 1.1800 17 1 -0.4850 0.8401 -0.0041 18 1 2.8221 -3.5813 -0.7700 19 1 3.6840 -4.4584 1.2626 20 1 3.4978 -2.6935 1.4000 21 1 1.5068 -4.7963 2.3700 22 1 2.5623 -3.7945 3.3967 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260324142.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = -106.452395 kcal Electronic energy + Delta-G solvation = -10296.099803 eV Core-core repulsion = 8236.231856 eV Total energy + Delta-G solvation = -2059.867947 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.10436 -38.01543 -36.43896 -34.49694 -31.01550 -27.98183 -25.52274 -24.18417 -20.74551 -18.88987 -18.06019 -17.48330 -16.79496 -16.32538 -15.70654 -15.46956 -14.95165 -14.15692 -13.59231 -13.05277 -12.95327 -12.83881 -12.42217 -12.15549 -11.83607 -11.33379 -11.01601 -10.44943 -9.40604 -8.26847 -6.55210 1.32348 1.37702 1.43829 1.50391 2.30578 2.57335 3.01963 3.42632 3.98669 4.14576 4.39939 4.46444 4.84079 4.97119 5.05277 5.51521 5.64658 5.94383 6.30296 6.54198 6.63355 6.95752 7.19113 8.72170 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.054721 B = 0.020602 C = 0.017906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.567534 B = 1358.747546 C = 1563.365020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.285 1.285 7 C -0.563 4.563 8 H 0.083 0.917 9 C 0.176 3.824 10 H 0.042 0.958 11 N -0.680 5.680 12 C 0.017 3.983 13 C 0.072 3.928 14 O -0.413 6.413 15 C 0.509 3.491 16 O -0.516 6.516 17 H 0.267 0.733 18 H 0.355 0.645 19 H 0.128 0.872 20 H 0.043 0.957 21 H 0.076 0.924 22 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 -5.089 2.337 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.195 4.195 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.201 1.201 6 H -0.211 1.211 7 C -0.602 4.602 8 H 0.101 0.899 9 C 0.065 3.935 10 H 0.060 0.940 11 N -0.313 5.313 12 C -0.112 4.112 13 C -0.001 4.001 14 O -0.334 6.334 15 C 0.353 3.647 16 O -0.399 6.399 17 H 0.076 0.924 18 H 0.174 0.826 19 H 0.146 0.854 20 H 0.061 0.939 21 H 0.095 0.905 22 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.620 -5.321 2.686 9.674 hybrid contribution 0.470 1.776 -0.291 1.860 sum 8.090 -3.545 2.395 9.151 Atomic orbital electron populations 1.70228 1.07794 1.28341 1.47702 1.26152 0.95753 1.04117 0.93524 0.85260 0.79289 0.78091 0.77606 1.17635 1.20093 1.21124 1.21775 0.93865 0.90398 1.54114 0.89874 1.19730 0.91953 0.90483 0.91296 0.94000 1.61149 1.21058 1.43211 1.05891 1.22657 0.96084 1.02895 0.89603 1.23700 0.87896 0.87306 1.01210 1.86596 1.55463 1.54856 1.36502 1.24326 0.86918 0.68290 0.85212 1.90412 1.17674 1.45219 1.86559 0.92384 0.82623 0.85393 0.93899 0.90547 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.25 11.99 21.45 0.26 -54.99 14 2 C 0.01 0.41 5.31 84.66 0.45 0.86 14 3 Si 0.97 42.93 29.54 68.60 2.03 44.95 14 4 H -0.25 -10.28 7.11 99.48 0.71 -9.58 14 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 14 6 H -0.29 -12.69 7.11 99.48 0.71 -11.98 14 7 C -0.56 -29.73 7.88 25.60 0.20 -29.53 14 8 H 0.08 4.07 7.10 -2.91 -0.02 4.05 14 9 C 0.18 9.03 3.07 43.55 0.13 9.17 14 10 H 0.04 2.41 8.14 -2.39 -0.02 2.39 14 11 N -0.68 -26.12 6.71 -497.15 -3.33 -29.45 14 12 C 0.02 0.53 6.49 86.33 0.56 1.09 14 13 C 0.07 2.33 7.25 72.03 0.52 2.85 14 14 O -0.41 -19.98 10.67 -64.93 -0.69 -20.67 14 15 C 0.51 28.29 6.04 71.43 0.43 28.72 14 16 O -0.52 -32.41 17.39 21.78 0.38 -32.03 14 17 H 0.27 15.53 8.31 -92.71 -0.77 14.76 14 18 H 0.36 12.06 8.84 -89.69 -0.79 11.27 14 19 H 0.13 2.73 8.14 -2.38 -0.02 2.71 14 20 H 0.04 1.47 6.79 -2.38 -0.02 1.46 14 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 14 22 H 0.14 3.28 8.14 -2.39 -0.02 3.26 14 Total: -1.00 -70.98 197.27 1.38 -69.60 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.44 Total: 9.42 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 2.30 Total: 13.16 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -3.08 Total: -84.45 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -0.31 Total: -52.70 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -70.98 1.38 -69.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324142.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.848 kcal (2) G-P(sol) polarization free energy of solvation -70.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds