Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09000 * 109.63342 * 299.31250 * 9 7 2 11 11 N 1.47202 * 109.63822 * 178.69169 * 9 7 2 12 12 C 1.47017 * 110.71410 * 294.44485 * 11 9 7 13 13 C 1.53147 * 109.44936 * 298.44885 * 12 11 9 14 14 O 1.45677 * 108.92871 * 57.24525 * 13 12 11 15 15 C 1.35103 * 115.11831 * 309.11506 * 14 13 12 16 16 O 1.20827 * 121.09123 * 228.31244 * 15 14 13 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.00899 * 111.00085 * 58.18780 * 11 9 7 19 19 H 1.08992 * 109.47817 * 178.45591 * 12 11 9 20 20 H 1.09008 * 109.47597 * 58.43722 * 12 11 9 21 21 H 1.08998 * 109.56400 * 297.41055 * 13 12 11 22 22 H 1.09000 * 109.65101 * 177.13126 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6287 -2.5669 0.8870 11 7 2.2040 -3.6207 -0.0352 12 6 2.9549 -3.6315 -1.2991 13 6 1.9831 -3.8183 -2.4680 14 8 0.9904 -2.7528 -2.4322 15 6 0.3798 -2.5777 -1.2398 16 8 -0.8226 -2.4866 -1.1619 17 1 -0.4850 0.8401 -0.0004 18 1 2.8288 -3.5853 0.7562 19 1 3.6725 -4.4517 -1.2885 20 1 3.4851 -2.6861 -1.4149 21 1 1.4855 -4.7839 -2.3781 22 1 2.5302 -3.7759 -3.4098 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260324144.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = -81.082407 kcal Electronic energy + Delta-G solvation = -10299.678318 eV Core-core repulsion = 8240.910495 eV Total energy + Delta-G solvation = -2058.767822 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.23387 -35.99456 -34.60021 -32.50085 -29.27568 -26.12063 -23.53417 -22.47902 -18.89947 -16.92325 -16.22537 -15.51070 -14.89404 -14.52555 -13.95998 -13.67416 -13.04874 -12.40929 -11.66160 -11.23490 -11.04529 -11.01227 -10.77795 -10.29760 -9.89909 -9.56329 -8.98080 -8.40825 -7.67468 -6.19168 -4.38661 3.19836 3.26709 3.28806 3.40697 4.25468 4.47075 4.99181 5.11955 5.47013 5.68315 5.78643 5.88443 6.34311 6.45486 6.96722 7.54385 7.61279 7.84054 8.06237 8.27125 8.66081 9.05033 9.30590 10.81489 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.054744 B = 0.020647 C = 0.017946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.349436 B = 1355.825438 C = 1559.866592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.067 3.933 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.175 3.825 10 H 0.077 0.923 11 N -0.687 5.687 12 C 0.018 3.982 13 C 0.085 3.915 14 O -0.390 6.390 15 C 0.511 3.489 16 O -0.469 6.469 17 H 0.270 0.730 18 H 0.342 0.658 19 H 0.075 0.925 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.435 -4.712 -1.901 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.602 4.602 8 H 0.087 0.913 9 C 0.065 3.935 10 H 0.094 0.906 11 N -0.319 5.319 12 C -0.113 4.113 13 C 0.010 3.990 14 O -0.311 6.311 15 C 0.352 3.648 16 O -0.349 6.349 17 H 0.080 0.920 18 H 0.159 0.841 19 H 0.093 0.907 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.114 -4.905 -2.237 7.431 hybrid contribution 1.158 1.779 0.165 2.130 sum 6.272 -3.126 -2.072 7.308 Atomic orbital electron populations 1.70044 1.05801 1.27736 1.45688 1.25161 0.95044 0.99981 0.93862 0.86431 0.79716 0.82638 0.78374 1.20330 1.20798 1.19631 1.21371 0.93174 0.90010 1.55662 0.91309 1.20002 0.91257 0.88832 0.93412 0.90578 1.61240 1.20750 1.46119 1.03756 1.22461 0.95948 1.01399 0.91447 1.23070 0.88631 0.88537 0.98714 1.86575 1.54229 1.52876 1.37435 1.23941 0.87310 0.69630 0.83966 1.90451 1.15877 1.42959 1.85603 0.92020 0.84077 0.90651 0.92714 0.92089 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 11.94 55.43 0.66 -24.99 14 2 C 0.07 1.87 5.30 -17.82 -0.09 1.78 14 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 14 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 14 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 14 7 C -0.56 -15.10 7.88 -34.44 -0.27 -15.37 14 8 H 0.07 1.76 7.12 -52.49 -0.37 1.38 14 9 C 0.17 4.47 3.09 -69.56 -0.22 4.26 14 10 H 0.08 2.11 8.14 -51.93 -0.42 1.69 14 11 N -0.69 -13.89 6.71 -108.49 -0.73 -14.62 14 12 C 0.02 0.31 6.49 -3.68 -0.02 0.28 14 13 C 0.09 1.53 7.25 37.23 0.27 1.80 14 14 O -0.39 -9.63 10.67 -41.59 -0.44 -10.08 14 15 C 0.51 14.03 5.98 36.30 0.22 14.24 14 16 O -0.47 -14.27 17.37 -18.63 -0.32 -14.60 14 17 H 0.27 7.66 8.31 -40.82 -0.34 7.32 14 18 H 0.34 6.23 8.84 -39.29 -0.35 5.88 14 19 H 0.08 1.02 8.14 -51.93 -0.42 0.60 14 20 H 0.05 1.04 6.80 -51.92 -0.35 0.69 14 21 H 0.06 1.01 8.14 -51.93 -0.42 0.58 14 22 H 0.10 1.34 8.14 -51.93 -0.42 0.92 14 LS Contribution 197.17 15.07 2.97 2.97 Total: -1.00 -32.28 197.17 -4.90 -37.18 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -1.90 Total: 1.08 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.12 Total: 6.99 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.07 Total: -39.61 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.77 Total: -24.67 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 2.97 Total: 2.97 kcal Total: -32.28 -4.90 -37.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324144.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.907 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds