Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.46817 * 179.97438 * 9 7 2 11 11 N 1.27420 * 124.97564 * 359.69718 * 10 9 7 12 12 C 1.44605 * 120.09639 * 179.77648 * 11 10 9 13 13 C 1.53734 * 111.12395 * 0.49768 * 12 11 10 14 14 S 1.76772 * 124.96874 * 179.97438 * 10 9 7 15 15 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 16 16 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 17 17 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 18 18 H 1.08999 * 109.34876 * 239.93716 * 12 11 10 19 19 H 1.08997 * 108.89243 * 120.76152 * 12 11 10 20 20 H 1.08997 * 110.68338 * 241.35506 * 13 12 11 21 21 H 1.09007 * 110.68276 * 118.17515 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6446 0.0005 11 7 3.4987 -3.5212 -0.0050 12 6 4.3416 -4.6962 0.0005 13 6 3.4993 -5.9822 0.0006 14 16 1.7880 -5.3560 0.0012 15 1 -0.4850 0.8400 -0.0004 16 1 0.6248 -2.5571 -0.8897 17 1 0.6241 -2.5568 0.8903 18 1 4.9740 -4.6828 0.8883 19 1 4.9727 -4.6820 -0.8880 20 1 3.6943 -6.5701 0.8975 21 1 3.6943 -6.5702 -0.8964 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260381603.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = -9.069745 kcal Electronic energy + Delta-G solvation = -7777.523756 eV Core-core repulsion = 6164.631508 eV Total energy + Delta-G solvation = -1612.892248 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 171.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.83322 -35.33060 -32.75457 -29.66984 -26.31127 -24.53689 -20.83958 -18.46398 -17.95338 -16.66980 -16.55659 -15.30091 -14.83919 -14.47204 -13.90450 -13.76059 -13.17571 -12.71893 -12.59380 -11.95975 -11.80528 -11.48191 -11.47141 -10.54498 -10.07490 -8.88172 -8.20057 -6.28902 0.59379 0.97836 1.18637 1.43928 1.46633 1.55185 2.44912 3.14697 3.34138 3.62595 3.91362 4.47761 4.55217 4.71827 4.90797 5.19635 5.26003 5.78702 6.09088 6.78481 6.86649 7.39157 8.91964 Molecular weight = 171.04amu Principal moments of inertia in cm(-1) A = 0.088398 B = 0.012741 C = 0.011252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.671864 B = 2197.025593 C = 2487.886083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.082 3.918 10 C 0.230 3.770 11 N -0.542 5.542 12 C 0.027 3.973 13 C -0.091 4.091 14 S -0.289 6.289 15 H 0.266 0.734 16 H 0.033 0.967 17 H 0.033 0.967 18 H 0.114 0.886 19 H 0.113 0.887 20 H 0.129 0.871 21 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 -8.892 0.019 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.041 3.959 10 C -0.070 4.070 11 N -0.256 5.256 12 C -0.105 4.105 13 C -0.241 4.241 14 S -0.060 6.060 15 H 0.075 0.925 16 H 0.050 0.950 17 H 0.051 0.949 18 H 0.132 0.868 19 H 0.131 0.869 20 H 0.147 0.853 21 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.706 -8.815 0.012 11.076 hybrid contribution 0.716 0.706 0.001 1.005 sum 7.422 -8.110 0.012 10.993 Atomic orbital electron populations 1.70062 1.07513 1.28132 1.51415 1.25889 0.95772 1.03008 0.94632 0.85432 0.78168 0.78005 0.78980 1.19519 1.20542 1.19503 1.21413 0.94136 0.90227 1.50766 0.91070 1.17955 0.91739 0.88556 0.97655 1.27897 0.93087 0.94239 0.91769 1.69865 1.06086 1.31171 1.18432 1.23170 0.97969 0.83510 1.05809 1.24913 0.89169 1.01040 1.09017 1.86641 1.18450 1.08124 1.92770 0.92492 0.94956 0.94930 0.86832 0.86924 0.85315 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.40 14 2 C 0.01 0.30 5.46 84.65 0.46 0.76 14 3 Si 0.97 44.81 29.54 68.60 2.03 46.83 14 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 14 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 14 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 14 7 C -0.53 -30.32 8.98 25.60 0.23 -30.09 14 8 H 0.07 4.10 6.88 -2.91 -0.02 4.08 14 9 C 0.08 4.40 5.59 29.10 0.16 4.56 14 10 C 0.23 10.45 7.38 88.75 0.65 11.11 14 11 N -0.54 -23.06 9.47 -338.06 -3.20 -26.27 14 12 C 0.03 0.78 7.55 86.98 0.66 1.43 14 13 C -0.09 -2.25 7.49 72.23 0.54 -1.71 14 14 S -0.29 -10.52 23.27 -56.49 -1.31 -11.84 14 15 H 0.27 14.97 8.31 -92.71 -0.77 14.19 14 16 H 0.03 1.83 8.14 -2.39 -0.02 1.81 14 17 H 0.03 1.85 8.14 -2.39 -0.02 1.83 14 18 H 0.11 2.82 8.14 -2.39 -0.02 2.80 14 19 H 0.11 2.80 8.14 -2.39 -0.02 2.78 14 20 H 0.13 2.48 8.14 -2.39 -0.02 2.46 14 21 H 0.13 2.48 8.14 -2.38 -0.02 2.46 14 Total: -1.00 -64.52 203.37 1.72 -62.81 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: 1.21 Total: -2.20 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 2.71 Total: -13.94 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.92 Total: -81.66 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -10.52 SS G_CDS: -1.31 Total: -11.84 kcal Total: -64.52 1.72 -62.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260381603.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.738 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds