Wall clock time and date at job start Mon Mar 30 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00331 * 2 1 4 4 H 1.48500 * 109.47459 * 270.00188 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00372 * 3 2 1 6 6 H 1.48506 * 109.47024 * 149.99966 * 3 2 1 7 7 C 1.40196 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.40116 * 120.00594 * 359.97438 * 7 2 1 10 10 C 1.39746 * 127.82171 * 180.02562 * 9 7 2 11 11 C 1.36961 * 113.97450 * 180.02562 * 10 9 7 12 12 O 1.35919 * 120.74676 * 180.02562 * 11 10 9 13 13 N 1.30750 * 118.50608 * 0.27529 * 11 10 9 14 14 S 1.69665 * 107.83846 * 359.59394 * 13 11 10 15 15 H 0.97007 * 119.99490 * 359.97438 * 1 2 3 16 16 H 1.07999 * 123.01064 * 0.02562 * 10 9 7 17 17 H 0.96700 * 114.00199 * 90.00061 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4891 2.0464 -1.4000 5 1 1.4391 2.6526 0.7001 6 1 3.5392 1.4400 0.7001 7 6 2.0084 -1.2142 -0.0005 8 1 3.0884 -1.2143 -0.0001 9 6 1.3078 -2.4276 -0.0005 10 6 1.8354 -3.7217 -0.0005 11 6 0.8866 -4.7095 -0.0011 12 8 1.2477 -6.0198 -0.0007 13 7 -0.3743 -4.3636 -0.0071 14 16 -0.4483 -2.6686 -0.0013 15 1 -0.4850 0.8402 0.0004 16 1 2.8961 -3.9246 -0.0001 17 1 1.3516 -6.3989 0.8829 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385493.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:18 Heat of formation + Delta-G solvation = -55.457726 kcal Electronic energy + Delta-G solvation = -7664.269059 eV Core-core repulsion = 5913.532183 eV Total energy + Delta-G solvation = -1750.736876 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.70457 -36.69829 -35.52783 -31.76751 -28.13674 -24.13560 -21.23171 -19.74826 -18.21763 -17.41680 -17.06167 -15.97789 -14.79408 -14.26247 -13.72917 -13.58343 -13.13833 -12.86675 -12.32656 -11.93548 -11.52153 -11.05139 -10.66952 -10.09984 -9.02023 -8.92467 -6.91339 0.54789 1.39316 1.40771 1.50127 1.60893 1.74096 2.01504 2.13363 2.89531 3.80803 4.81351 4.99463 5.24109 5.38516 5.86515 6.15051 6.31189 6.51680 6.88786 7.88129 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.102221 B = 0.015713 C = 0.013702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.850739 B = 1781.542110 C = 2043.014109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.013 3.987 3 Si 1.023 2.977 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.247 1.247 7 C -0.364 4.364 8 H 0.119 0.881 9 C 0.022 3.978 10 C -0.453 4.453 11 C 0.318 3.682 12 O -0.497 6.497 13 N -0.666 5.666 14 S 0.169 5.831 15 H 0.317 0.683 16 H 0.131 0.869 17 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 5.334 1.775 6.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.210 4.210 3 Si 0.840 3.160 4 H -0.179 1.179 5 H -0.182 1.182 6 H -0.170 1.170 7 C -0.401 4.401 8 H 0.137 0.863 9 C -0.104 4.104 10 C -0.487 4.487 11 C 0.114 3.886 12 O -0.306 6.306 13 N -0.503 5.503 14 S 0.312 5.688 15 H 0.130 0.870 16 H 0.149 0.851 17 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.653 5.462 1.169 5.825 hybrid contribution 1.853 -0.332 0.450 1.936 sum 3.506 5.130 1.619 6.421 Atomic orbital electron populations 1.69101 1.09639 1.33689 1.27767 1.27566 0.95997 1.06379 0.91049 0.84549 0.78739 0.72487 0.80255 1.17931 1.18222 1.16987 1.19826 0.96787 0.88520 1.34968 0.86283 1.23205 0.96257 0.96413 0.94503 1.20686 0.99693 0.91039 1.37269 1.19230 0.88450 0.84834 0.96120 1.84669 1.89840 1.21375 1.34707 1.76106 1.21069 1.10799 1.42278 1.84840 1.08048 0.97297 1.78609 0.86955 0.85123 0.73843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.29 10.95 21.87 0.24 -35.05 13 2 C 0.01 0.57 5.50 85.33 0.47 1.04 13 3 Si 1.02 30.79 29.56 68.60 2.03 32.82 13 4 H -0.26 -7.44 7.11 99.48 0.71 -6.73 13 5 H -0.26 -7.30 7.11 99.48 0.71 -6.59 13 6 H -0.25 -7.10 7.11 99.48 0.71 -6.39 13 7 C -0.36 -17.46 9.39 23.20 0.22 -17.25 13 8 H 0.12 5.17 7.85 -2.91 -0.02 5.14 13 9 C 0.02 1.18 6.40 23.09 0.15 1.33 13 10 C -0.45 -24.14 10.30 22.33 0.23 -23.91 13 11 C 0.32 17.11 7.65 84.55 0.65 17.75 13 12 O -0.50 -22.64 13.59 -92.63 -1.26 -23.90 13 13 N -0.67 -38.04 12.08 -174.50 -2.11 -40.15 13 14 S 0.17 9.26 21.26 -56.49 -1.20 8.06 13 15 H 0.32 12.45 8.29 -92.70 -0.77 11.69 13 16 H 0.13 6.44 8.06 -2.91 -0.02 6.42 13 17 H 0.40 13.55 9.06 -74.06 -0.67 12.88 13 Total: -1.00 -62.88 181.27 0.05 -62.84 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.63 Total: 16.41 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 1.71 Total: -21.03 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.87 Total: -75.20 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.26 Total: -23.90 kcal Atomic # 14 Polarization: 30.79 SS G_CDS: 2.03 Total: 32.82 kcal Atomic # 16 Polarization: 9.26 SS G_CDS: -1.20 Total: 8.06 kcal Total: -62.88 0.05 -62.84 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385493.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.378 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds