Wall clock time and date at job start Mon Mar 30 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99699 * 2 1 4 4 H 1.48496 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47025 * 300.00147 * 3 2 1 6 6 H 1.48496 * 109.46923 * 59.99845 * 3 2 1 7 7 C 1.37878 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99848 * 175.08959 * 7 2 1 9 9 C 1.50696 * 119.99975 * 355.09398 * 7 2 1 10 10 C 1.53004 * 110.45644 * 65.14308 * 9 7 2 11 11 N 1.46900 * 109.47016 * 61.10259 * 10 9 7 12 12 C 1.54514 * 110.62733 * 302.45875 * 9 7 2 13 13 C 1.54473 * 104.06444 * 241.29827 * 12 9 7 14 14 O 1.44431 * 104.80285 * 336.02143 * 13 12 9 15 15 C 1.44431 * 105.27359 * 40.51143 * 14 13 12 16 16 H 0.97002 * 120.00305 * 0.02562 * 1 2 3 17 17 H 1.09005 * 109.46945 * 181.10059 * 10 9 7 18 18 H 1.08994 * 109.47370 * 301.09550 * 10 9 7 19 19 H 1.00902 * 110.99815 * 184.68588 * 11 10 9 20 20 H 1.00905 * 110.99496 * 308.63416 * 11 10 9 21 21 H 1.08997 * 110.51154 * 359.94358 * 12 9 7 22 22 H 1.09005 * 110.50646 * 122.65317 * 12 9 7 23 23 H 1.08992 * 110.37621 * 217.19054 * 13 12 9 24 24 H 1.09001 * 110.37615 * 94.84885 * 13 12 9 25 25 H 1.08996 * 110.37037 * 200.65365 * 15 14 13 26 26 H 1.08999 * 110.46718 * 78.36714 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0795 9 6 1.2554 -2.4967 0.1127 10 6 0.3722 -2.7133 -1.1178 11 7 1.2140 -2.7736 -2.3202 12 6 0.4042 -2.5258 1.4019 13 6 0.9752 -3.7174 2.2020 14 8 1.5836 -4.5712 1.2086 15 6 2.2400 -3.6742 0.2864 16 1 -0.4851 0.8400 -0.0004 17 1 -0.1764 -3.6492 -1.0110 18 1 -0.3329 -1.8872 -1.2089 19 1 0.6495 -2.8396 -3.1539 20 1 1.8358 -1.9802 -2.3664 21 1 0.5252 -1.5977 1.9605 22 1 -0.6458 -2.6945 1.1626 23 1 0.1743 -4.2467 2.7181 24 1 1.7239 -3.3719 2.9150 25 1 2.4106 -4.1703 -0.6690 26 1 3.1832 -3.3217 0.7038 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414174.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:19 Heat of formation + Delta-G solvation = -54.968441 kcal Electronic energy + Delta-G solvation = -10576.956902 eV Core-core repulsion = 8655.154561 eV Total energy + Delta-G solvation = -1921.802341 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.44556 -34.43878 -31.99169 -29.97280 -27.98451 -24.76612 -23.44537 -21.08929 -18.96716 -16.20252 -15.25853 -15.01750 -14.30179 -14.04308 -13.62343 -13.24685 -12.49414 -11.49932 -11.47729 -11.16455 -11.10007 -10.60521 -10.46011 -10.11815 -9.63340 -9.31144 -8.77861 -8.63173 -8.48984 -7.47368 -6.09103 -4.17306 3.21263 3.31000 3.35072 4.33204 5.12704 5.17792 5.81624 6.07428 6.18768 6.26920 6.37386 6.62037 6.74721 6.92281 7.07570 7.17135 7.25064 7.57484 7.67553 7.72736 7.92861 8.34340 8.45654 8.60130 8.87024 9.47118 10.93563 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.050771 B = 0.019515 C = 0.017256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.359575 B = 1434.439852 C = 1622.280940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.050 3.950 10 C 0.078 3.922 11 N -0.851 5.851 12 C -0.118 4.118 13 C 0.041 3.959 14 O -0.398 6.398 15 C 0.054 3.946 16 H 0.259 0.741 17 H 0.029 0.971 18 H 0.055 0.945 19 H 0.315 0.685 20 H 0.345 0.655 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -1.880 0.276 2.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.049 3.951 10 C -0.053 4.053 11 N -0.379 5.379 12 C -0.157 4.157 13 C -0.036 4.036 14 O -0.318 6.318 15 C -0.022 4.022 16 H 0.069 0.931 17 H 0.048 0.952 18 H 0.073 0.927 19 H 0.124 0.876 20 H 0.158 0.842 21 H 0.092 0.908 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.870 -2.656 0.595 2.858 hybrid contribution -0.113 2.189 -0.181 2.200 sum 0.757 -0.467 0.414 0.981 Atomic orbital electron populations 1.69954 1.05787 1.26351 1.49990 1.24978 0.94843 0.99001 0.94967 0.86578 0.80319 0.83828 0.77569 1.19694 1.21179 1.21033 1.21087 0.93136 0.89739 1.50481 0.92282 1.19382 0.91810 0.92934 0.91007 1.21757 0.95166 0.97842 0.90492 1.58907 1.24177 1.50696 1.04121 1.22780 0.98690 0.96494 0.97693 1.23427 0.95897 0.92407 0.91884 1.88941 1.71492 1.31402 1.39963 1.23639 0.95308 0.91144 0.92136 0.93057 0.95242 0.92687 0.87642 0.84167 0.90805 0.93222 0.91357 0.93860 0.89513 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.55 10.57 55.43 0.59 -22.97 15 2 C 0.06 1.66 4.89 -17.82 -0.09 1.57 15 3 Si 0.89 20.34 29.54 -169.99 -5.02 15.31 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.51 -13.05 6.72 -34.44 -0.23 -13.28 15 8 H 0.06 1.54 7.64 -52.48 -0.40 1.14 15 9 C 0.05 1.20 0.48 -154.09 -0.07 1.12 15 10 C 0.08 1.84 5.44 -3.82 -0.02 1.82 15 11 N -0.85 -17.90 8.84 -10.37 -0.09 -17.99 15 12 C -0.12 -2.76 5.45 -25.16 -0.14 -2.90 15 13 C 0.04 0.85 7.63 37.93 0.29 1.14 15 14 O -0.40 -9.10 11.65 -35.23 -0.41 -9.51 15 15 C 0.05 1.24 6.62 37.93 0.25 1.49 15 16 H 0.26 6.70 8.31 -40.82 -0.34 6.36 15 17 H 0.03 0.69 8.14 -51.93 -0.42 0.26 15 18 H 0.05 1.42 6.37 -51.93 -0.33 1.09 15 19 H 0.31 5.82 9.08 -39.29 -0.36 5.47 15 20 H 0.34 7.53 7.85 -39.29 -0.31 7.23 15 21 H 0.07 1.85 7.14 -51.93 -0.37 1.48 15 22 H 0.05 1.17 7.73 -51.93 -0.40 0.77 15 23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.09 1.97 7.26 -51.93 -0.38 1.59 15 26 H 0.04 0.94 7.75 -51.93 -0.40 0.54 15 LS Contribution 212.73 15.07 3.21 3.21 Total: -1.00 -26.81 212.73 -5.09 -31.90 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.35 Total: 9.08 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.01 Total: -9.04 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.49 Total: -40.96 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.41 Total: -9.51 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -26.81 -5.09 -31.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414174.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.069 kcal (2) G-P(sol) polarization free energy of solvation -26.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds